Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005138.1 Kokia drynarioides strain JFW-HI SEQ_118976, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 805

Length: 1343
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.32


Found at i:45 original size:20 final size:20

Alignment explanation


    Indices: 20--68  Score: 62
    Period size: 20  Copynumber: 2.5  Consensus size: 20

         10 CCAACTATTG

                  *    *        
         20 CTGATGTTGCTTGATGCTAC
          1 CTGATGCTGCTCGATGCTAC

                         *    * 
         40 CTGATGCTGCTCGGTGCTGC
          1 CTGATGCTGCTCGATGCTAC

                     
         60 CTGATGCTG
          1 CTGATGCTG

         69 TTGGCACACT


Statistics
Matches: 25,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  20   25  1.00

ACGTcount: A:0.10, C:0.24, G:0.31, T:0.35


Consensus pattern (20 bp):   
CTGATGCTGCTCGATGCTAC
Done.