Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005139.1 Kokia drynarioides strain JFW-HI SEQ_118977, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2251
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.33


Found at i:1887 original size:10 final size:8

Alignment explanation


    Indices: 1856--1904  Score: 73
    Period size: 8  Copynumber: 6.2  Consensus size: 8

       1846 CATCACTCAA

                    
       1856 CATTCT-T
          1 CATTCTCT

                    
       1863 CATTCTCT
          1 CATTCTCT

                    
       1871 CATTCTCT
          1 CATTCTCT

                    
       1879 CATTCTCT
          1 CATTCTCT

               *    
       1887 CATCCTCT
          1 CATTCTCT

               *    
       1895 CATCCTCT
          1 CATTCTCT

              
       1903 CA
          1 CA

       1905 ATCCTTTTTC


Statistics
Matches: 40,  Mismatches: 1, Indels: 1
        0.95            0.02        0.02

Matches are distributed among these distances:
   7    6  0.15
   8   34  0.85

ACGTcount: A:0.14, C:0.41, G:0.00, T:0.45


Consensus pattern (8 bp):   
CATTCTCT

Found at i:1894 original size:24 final size:23

Alignment explanation


    Indices: 1838--1904  Score: 73
    Period size: 24  Copynumber: 2.8  Consensus size: 23

       1828 CACTTTCAAA

                              *      
       1838 TCATCC-CTCATCACTCAACATTCT
          1 TCATCCTCTCATC-CTC-TCATTCT

                *       *          
       1862 TCATTCTCTCATTCTCTCATTCT
          1 TCATCCTCTCATCCTCTCATTCT

                                
       1885 CTCATCCTCTCATCCTCTCA
          1 -TCATCCTCTCATCCTCTCA

       1905 ATCCTTTTTC


Statistics
Matches: 36,  Mismatches: 5, Indels: 4
        0.80            0.11        0.09

Matches are distributed among these distances:
  23    6  0.17
  24   25  0.69
  25    5  0.14

ACGTcount: A:0.18, C:0.42, G:0.00, T:0.40


Consensus pattern (23 bp):   
TCATCCTCTCATCCTCTCATTCT
Done.