Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005140.1 Kokia drynarioides strain JFW-HI SEQ_118978, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5784
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36


Found at i:960 original size:17 final size:18

Alignment explanation


    Indices: 882--958  Score: 104
    Period size: 17  Copynumber: 4.3  Consensus size: 18

        872 CCAAACTCAT

                            * 
        882 TTTAAATTTATTTTAAGA
          1 TTTAAATTTATTTTAAAA

                              
        900 -TTAAATTTATTTTAAAA
          1 TTTAAATTTATTTTAAAA

                               
        917 TTTAAATTTATTTTCAAAA
          1 TTTAAATTTATTTT-AAAA

                  *     *     
        936 TTTAAAATTATTAT-AAA
          1 TTTAAATTTATTTTAAAA

                  
        953 TTTAAA
          1 TTTAAA

        959 ATAAATAAAG


Statistics
Matches: 54,  Mismatches: 3, Indels: 5
        0.87            0.05        0.08

Matches are distributed among these distances:
  17   25  0.46
  18   13  0.24
  19   16  0.30

ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52


Consensus pattern (18 bp):   
TTTAAATTTATTTTAAAA
Done.