Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005143.1 Kokia drynarioides strain JFW-HI SEQ_118981, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1777
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39


Found at i:217 original size:21 final size:20

Alignment explanation


    Indices: 193--244  Score: 54
    Period size: 19  Copynumber: 2.6  Consensus size: 20

        183 TCATTTTAAA

                                 
        193 TTTATAATTTAAGCTAAGAAT
          1 TTTATAATTTAAG-TAAGAAT

                     *  *        
        214 TTTATAA--CACTGTAAGAAT
          1 TTTATAATTTA-AGTAAGAAT

                        
        233 TTTATAATTTAA
          1 TTTATAATTTAA

        245 ATATCATTAT


Statistics
Matches: 24,  Mismatches: 4, Indels: 7
        0.69            0.11        0.20

Matches are distributed among these distances:
  19   15  0.62
  20    1  0.04
  21    8  0.33

ACGTcount: A:0.42, C:0.06, G:0.08, T:0.44


Consensus pattern (20 bp):   
TTTATAATTTAAGTAAGAAT
Done.