genome.fa.s5147.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01005147.1 Kokia drynarioides strain JFW-HI SEQ_118987, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108457

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
471--597	46	2.7	48	83	9	163	11	23	19	44	1.84
471--597	23	5.4	23	79	9	132	11	23	19	44	1.84
1257--1317	28	2.1	28	80	17	72	27	9	27	34	1.89
1299--1436	59	2.3	59	81	4	145	36	6	25	31	1.81
1394--1468	29	2.6	27	78	12	69	33	5	28	33	1.80
1430--1704	30	9.7	29	71	17	157	34	4	24	37	1.74
1362--1610	117	2.1	117	80	5	272	35	4	24	36	1.74
1421--1704	58	5.0	58	71	16	173	34	3	25	36	1.74
1588--1630	20	2.2	20	91	8	70	32	2	23	41	1.67
1534--1682	79	1.9	81	87	2	221	36	3	24	35	1.72
1608--1681	31	2.5	30	82	4	96	35	4	25	35	1.75
3542--3621	18	5.0	16	72	18	60	55	3	2	38	1.32
3551--3611	18	3.4	18	84	4	79	55	3	3	37	1.32
4837--4916	31	2.6	28	80	9	70	36	7	6	50	1.56
23649--23673	13	1.9	13	100	0	50	24	0	0	76	0.80
25585--25622	2	19.5	2	94	5	69	50	0	0	50	1.00
31644--31700	29	2.0	29	82	6	71	56	12	7	24	1.61
45895--45933	3	13.0	3	100	0	78	66	0	0	33	0.92
57874--57911	17	2.2	18	85	4	51	71	0	23	5	1.07
64550--64609	31	1.9	31	83	6	77	60	0	0	40	0.97
65792--65819	6	4.7	6	100	0	56	35	0	0	64	0.94
75182--75240	5	11.8	5	100	0	118	61	0	18	20	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93399--93452	28	1.9	28	84	0	72	53	0	0	46	1.00
108412--108457	2	23.0	2	100	0	92	50	0	0	50	1.00

Tables:   1

The End!