Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005149.1 Kokia drynarioides strain JFW-HI SEQ_118990, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5221
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.32


Found at i:428 original size:37 final size:37

Alignment explanation


    Indices: 387--496  Score: 175
    Period size: 37  Copynumber: 2.9  Consensus size: 37

        377 ATAGGAATAT

                          *                *     
        387 ATACCTTTCTTGTTAGTATTCTCATTCTATTTTGAAC
          1 ATACCTTTCTTGTTTGTATTCTCATTCTATTATGAAC

                     *                          *
        424 ATACCTTTCATGTTTGTATTCTCATTCTATTATGAAT
          1 ATACCTTTCTTGTTTGTATTCTCATTCTATTATGAAC

                                                
        461 ATACCTTTCTTGTTTGTATTCTCATTCTATTGATGA
          1 ATACCTTTCTTGTTTGTATTCTCATTCTATT-ATGA

        497 TTAATGTTAC


Statistics
Matches: 67,  Mismatches: 5, Indels: 1
        0.92            0.07        0.01

Matches are distributed among these distances:
  37   63  0.94
  38    4  0.06

ACGTcount: A:0.22, C:0.17, G:0.09, T:0.52


Consensus pattern (37 bp):   
ATACCTTTCTTGTTTGTATTCTCATTCTATTATGAAC

Found at i:4881 original size:18 final size:20

Alignment explanation


    Indices: 4844--4884  Score: 59
    Period size: 20  Copynumber: 2.1  Consensus size: 20

       4834 TTAATAGATA

                                
       4844 AAAATAAAAATAATAACTAT
          1 AAAATAAAAATAATAACTAT

                     *          
       4864 AAAATAAAACT-A-AACTAT
          1 AAAATAAAAATAATAACTAT

               
       4882 AAA
          1 AAA

       4885 CTTTAAAACA


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  18    9  0.45
  19    1  0.05
  20   10  0.50

ACGTcount: A:0.71, C:0.07, G:0.00, T:0.22


Consensus pattern (20 bp):   
AAAATAAAAATAATAACTAT
Done.