Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000515.1 Kokia drynarioides strain JFW-HI SEQ_111400, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1954
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.36


Found at i:903 original size:52 final size:51

Alignment explanation


    Indices: 840--1028  Score: 200
    Period size: 52  Copynumber: 3.6  Consensus size: 51

        830 GCTATAAACG

                                                                 
        840 AAAGGATCCGATGACTAAGTGTCATCATGAGTAAATGAATCCTTTACGGATTT
          1 AAAGG-TCCGATGACTAAGTGTCATCATGAGTAAATGAATCCTTTACGGA-TT

                                     *               * * *     
        893 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCATGATGGATT
          1 AAAGGTCCGATGACTAAGTGTCATCATGAGTAAATGAATCCTTTACGGATT

                  *        *     *     *    *       *  *      * 
        944 AAAGGTTCGATGACTCAGTGTTATCATAAGTATATGAATTTCTATACGGAAT
          1 AAAGGTCCGATGACTAAGTGTCATCATGAGTAAATGAA-TCCTTTACGGATT

               *                       *      
        996 AAGGGGTCCGATGACTATA-TGTCATCGTGAGTA
          1 AA-AGGTCCGATGACTA-AGTGTCATCATGAGTA

       1029 TTAAATGAAA


Statistics
Matches: 111,  Mismatches: 22, Indels: 6
        0.80            0.16        0.04

Matches are distributed among these distances:
  51   34  0.31
  52   49  0.44
  53   27  0.24
  54    1  0.01

ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30


Consensus pattern (51 bp):   
AAAGGTCCGATGACTAAGTGTCATCATGAGTAAATGAATCCTTTACGGATT

Done.