Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005171.1 Kokia drynarioides strain JFW-HI SEQ_119022, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2733
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37


Found at i:2189 original size:31 final size:31

Alignment explanation


    Indices: 2152--2212  Score: 95
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       2142 GATGCATGGC

                    *               *      
       2152 CTTAAATTGTGACAAAAGCTTAAATTGTGGT
          1 CTTAAATTCTGACAAAAGCTTAAACTGTGGT

                              *           
       2183 CTTAAATTCTGACAAAAGTTTAAACTGTGG
          1 CTTAAATTCTGACAAAAGCTTAAACTGTGG

       2213 CTTTGAATTG


Statistics
Matches: 27,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  31   27  1.00

ACGTcount: A:0.36, C:0.11, G:0.18, T:0.34


Consensus pattern (31 bp):   
CTTAAATTCTGACAAAAGCTTAAACTGTGGT
Done.