Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005178.1 Kokia drynarioides strain JFW-HI SEQ_119034, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10029
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32

Warning! 13 characters in sequence are not A, C, G, or T


Found at i:2437 original size:12 final size:12

Alignment explanation


    Indices: 2407--2437  Score: 53
    Period size: 12  Copynumber: 2.6  Consensus size: 12

       2397 ATTTTCTTTC

                        
       2407 TTTTCTTTCTCT
          1 TTTTCTTTCTCT

              *         
       2419 TTATCTTTCTCT
          1 TTTTCTTTCTCT

                   
       2431 TTTTCTT
          1 TTTTCTT

       2438 ATTACTTTGT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  12   17  1.00

ACGTcount: A:0.03, C:0.23, G:0.00, T:0.74


Consensus pattern (12 bp):   
TTTTCTTTCTCT
Done.