genome.fa.s518.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01000518.1 Kokia drynarioides strain JFW-HI SEQ_111404, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101244

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4550--4629	42	1.9	42	92	0	133	37	13	20	28	1.91
8296--8333	16	2.4	16	82	8	51	63	0	2	34	1.09
8742--8772	2	15.5	2	100	0	62	51	0	0	48	1.00
11330--11446	61	1.9	59	93	6	200	41	5	27	25	1.76
13580--13655	39	1.9	40	89	2	118	30	19	15	34	1.93
14615--14672	11	5.3	11	76	0	53	65	15	3	15	1.40
14640--14698	21	2.8	21	73	2	64	64	20	6	8	1.44
16782--16850	33	2.1	33	94	0	120	49	15	4	30	1.64
28390--28446	30	1.9	29	82	10	71	40	5	3	50	1.42
28543--28603	31	2.0	31	83	6	79	50	6	1	40	1.38
37785--37827	22	2.0	22	100	0	86	18	37	4	39	1.72
37787--37836	22	2.3	22	86	6	66	22	34	4	40	1.72
42063--42116	23	2.2	24	83	9	74	12	31	16	38	1.87
42072--42117	23	2.0	23	95	0	83	13	28	21	36	1.91
42037--42144	48	2.2	48	79	7	112	12	31	19	37	1.88
47550--47595	25	1.9	25	86	8	69	32	4	6	56	1.45
48801--48862	27	2.3	27	80	2	72	30	14	35	19	1.92
49179--49216	16	2.4	16	100	0	76	50	0	0	50	1.00
53389--53512	43	2.9	42	82	7	158	29	8	20	41	1.81
62399--62461	19	3.3	19	68	27	60	36	9	3	50	1.51
62390--62484	39	2.5	38	94	5	174	35	8	2	53	1.43
67005--67037	7	4.7	7	100	0	66	30	0	69	0	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68981--69060	30	2.7	30	96	1	144	48	10	10	31	1.69
69205--69259	27	2.0	27	82	7	65	67	5	1	25	1.22
76198--76226	13	2.3	13	94	5	51	27	0	0	72	0.85
76858--76903	24	1.9	24	100	0	92	28	0	19	52	1.47
78846--78904	21	2.8	21	78	0	64	28	27	13	30	1.94
85735--85782	25	2.0	24	83	4	60	39	2	2	56	1.23
85741--85795	25	2.2	25	83	6	67	41	0	3	54	1.18
85890--85985	47	2.1	47	82	5	115	26	4	14	55	1.57
86230--86281	25	2.0	26	82	17	65	48	1	3	46	1.31
87527--87590	29	2.2	28	81	13	76	34	1	4	59	1.28
93967--94016	25	2.1	23	85	7	64	24	0	4	72	1.02
94877--94914	15	2.4	17	86	8	53	60	0	5	34	1.19
95165--95192	2	14.0	2	100	0	56	50	0	0	50	1.00
101220--101244	6	4.2	6	100	0	50	32	68	0	0	0.90

Tables:   1

The End!