Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005182.1 Kokia drynarioides strain JFW-HI SEQ_119039, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2926
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34


Found at i:1474 original size:18 final size:18

Alignment explanation


    Indices: 1431--1466  Score: 65
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       1421 AAATGCGCTA

                              
       1431 ACAAAT-AAAATGCAATG
          1 ACAAATAAAAATGCAATG

                              
       1448 ACAAATAAAAATGCAATG
          1 ACAAATAAAAATGCAATG

             
       1466 A
          1 A

       1467 AAACTAAATT


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  17    6  0.33
  18   12  0.67

ACGTcount: A:0.61, C:0.11, G:0.11, T:0.17


Consensus pattern (18 bp):   
ACAAATAAAAATGCAATG
Done.