Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005183.1 Kokia drynarioides strain JFW-HI SEQ_119040, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13367
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34


Found at i:9022 original size:9 final size:10

Alignment explanation


    Indices: 8998--9024  Score: 54
    Period size: 10  Copynumber: 2.7  Consensus size: 10

       8988 CAATAATACT

                      
       8998 GAAAAATAAA
          1 GAAAAATAAA

                      
       9008 GAAAAATAAA
          1 GAAAAATAAA

                   
       9018 GAAAAAT
          1 GAAAAAT

       9025 GCAATAATTT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   17  1.00

ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11


Consensus pattern (10 bp):   
GAAAAATAAA
Done.