Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005186.1 Kokia drynarioides strain JFW-HI SEQ_119043, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9609
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.35


Found at i:5881 original size:3 final size:3

Alignment explanation


    Indices: 5875--5901  Score: 54
    Period size: 3  Copynumber: 9.0  Consensus size: 3

       5865 TTGTATATTC

                                               
       5875 TAA TAA TAA TAA TAA TAA TAA TAA TAA
          1 TAA TAA TAA TAA TAA TAA TAA TAA TAA

       5902 ATTGGATCCA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   24  1.00

ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33


Consensus pattern (3 bp):   
TAA

Found at i:5937 original size:18 final size:18

Alignment explanation


    Indices: 5914--5950  Score: 74
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       5904 TGGATCCAAA

                              
       5914 ACCCAAGTAGAAAAGCCC
          1 ACCCAAGTAGAAAAGCCC

                              
       5932 ACCCAAGTAGAAAAGCCC
          1 ACCCAAGTAGAAAAGCCC

             
       5950 A
          1 A

       5951 ATAAAAAACC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.46, C:0.32, G:0.16, T:0.05


Consensus pattern (18 bp):   
ACCCAAGTAGAAAAGCCC
Done.