Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005187.1 Kokia drynarioides strain JFW-HI SEQ_119044, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9002
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35


Found at i:2902 original size:18 final size:18

Alignment explanation


    Indices: 2879--2915  Score: 74
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       2869 GGTTTTTTAT

                              
       2879 TGGGCTTTTCTACTTGGG
          1 TGGGCTTTTCTACTTGGG

                              
       2897 TGGGCTTTTCTACTTGGG
          1 TGGGCTTTTCTACTTGGG

             
       2915 T
          1 T

       2916 TTTGGATCCA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.05, C:0.16, G:0.32, T:0.46


Consensus pattern (18 bp):   
TGGGCTTTTCTACTTGGG

Found at i:2936 original size:3 final size:3

Alignment explanation


    Indices: 2928--2954  Score: 54
    Period size: 3  Copynumber: 9.0  Consensus size: 3

       2918 TGGATCCAAT

                                               
       2928 TTA TTA TTA TTA TTA TTA TTA TTA TTA
          1 TTA TTA TTA TTA TTA TTA TTA TTA TTA

       2955 GAATATACAA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   24  1.00

ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67


Consensus pattern (3 bp):   
TTA

Done.