Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005188.1 Kokia drynarioides strain JFW-HI SEQ_119045, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4867
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33


Found at i:1234 original size:31 final size:32

Alignment explanation


    Indices: 1169--1236  Score: 84
    Period size: 31  Copynumber: 2.2  Consensus size: 32

       1159 TCATACTTTA

                   *        *               
       1169 AAATTTAGGTTTAATTGTAAAATTATATTGTT
          1 AAATTTAAGTTTAATTATAAAATTATATTGTT

                                *     *  *  
       1201 AAATTTAAGTTT-ATTATAATATTATTTTTTT
          1 AAATTTAAGTTTAATTATAAAATTATATTGTT

                 
       1232 AAATT
          1 AAATT

       1237 ACATTACTAT


Statistics
Matches: 31,  Mismatches: 5, Indels: 1
        0.84            0.14        0.03

Matches are distributed among these distances:
  31   20  0.65
  32   11  0.35

ACGTcount: A:0.38, C:0.00, G:0.07, T:0.54


Consensus pattern (32 bp):   
AAATTTAAGTTTAATTATAAAATTATATTGTT

Found at i:3404 original size:4 final size:4

Alignment explanation


    Indices: 3395--3427  Score: 66
    Period size: 4  Copynumber: 8.2  Consensus size: 4

       3385 TTATCTATTT

                                                     
       3395 GATG GATG GATG GATG GATG GATG GATG GATG G
          1 GATG GATG GATG GATG GATG GATG GATG GATG G

       3428 TGTTTGCATT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   29  1.00

ACGTcount: A:0.24, C:0.00, G:0.52, T:0.24


Consensus pattern (4 bp):   
GATG

Done.