Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005193.1 Kokia drynarioides strain JFW-HI SEQ_119053, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 979

Length: 1633
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.38


Found at i:127 original size:30 final size:30

Alignment explanation


    Indices: 90--223  Score: 155
    Period size: 30  Copynumber: 4.5  Consensus size: 30

         80 TTATATACTA

                      *                   
         90 CAAAATTACAATTTGACCTCTAAACTTTTC
          1 CAAAATTACATTTTGACCTCTAAACTTTTC

            *             *               
        120 TAAAATTACATTTTTACCTCTAAAC-TTTC
          1 CAAAATTACATTTTGACCTCTAAACTTTTC

                   *          *           *
        149 CAAAATTGCATTTTGACCCCTTAAACTTTTT
          1 CAAAATTACATTTTGACCTC-TAAACTTTTC

             *     *                    *  
        180 CGAAATTGCATTTTGAGCCTC-AAACTTCTC
          1 CAAAATTACATTTTGA-CCTCTAAACTTTTC

                          
        210 CAAAATTACATTTT
          1 CAAAATTACATTTT

        224 TATTTCAGAC


Statistics
Matches: 87,  Mismatches: 14, Indels: 6
        0.81            0.13        0.06

Matches are distributed among these distances:
  29   20  0.23
  30   46  0.53
  31   18  0.21
  32    3  0.03

ACGTcount: A:0.33, C:0.22, G:0.05, T:0.40


Consensus pattern (30 bp):   
CAAAATTACATTTTGACCTCTAAACTTTTC

Done.