Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005204.1 Kokia drynarioides strain JFW-HI SEQ_119071, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1777
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37


Found at i:1737 original size:17 final size:16

Alignment explanation


    Indices: 1715--1753  Score: 51
    Period size: 17  Copynumber: 2.4  Consensus size: 16

       1705 TATAATAAAA

                             
       1715 ATTTTAACTAATAATTT
          1 ATTTTAACTAAT-ATTT

                   *        
       1732 ATTTTAATTAATATTT
          1 ATTTTAACTAATATTT

            *     
       1748 TTTTTA
          1 ATTTTA

       1754 GTGAGTTACA


Statistics
Matches: 20,  Mismatches: 2, Indels: 1
        0.87            0.09        0.04

Matches are distributed among these distances:
  16    9  0.45
  17   11  0.55

ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62


Consensus pattern (16 bp):   
ATTTTAACTAATATTT
Done.