Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005210.1 Kokia drynarioides strain JFW-HI SEQ_119083, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2458
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37


Found at i:1382 original size:30 final size:30

Alignment explanation


    Indices: 1325--1415  Score: 107
    Period size: 29  Copynumber: 3.1  Consensus size: 30

       1315 CTTAAGAGGA

                       *                   
       1325 CCCTAAACTTTCCAAAAA-T-CTATTTTGAC
          1 CCCTAAACTTTTCAAAAATTAC-ATTTTGAC

                                          
       1354 CCCTAAACTTTTCAAAAATTACATTTTGA-
          1 CCCTAAACTTTTCAAAAATTACATTTTGAC

               *   *     *  *             
       1383 CCCAAAATTTTTCTAAGATTACATTTTGAC
          1 CCCTAAACTTTTCAAAAATTACATTTTGAC

               
       1413 CCC
          1 CCC

       1416 AAATTCTTCG


Statistics
Matches: 54,  Mismatches: 5, Indels: 5
        0.84            0.08        0.08

Matches are distributed among these distances:
  29   42  0.78
  30   11  0.20
  31    1  0.02

ACGTcount: A:0.34, C:0.25, G:0.04, T:0.36


Consensus pattern (30 bp):   
CCCTAAACTTTTCAAAAATTACATTTTGAC

Done.