Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005211.1 Kokia drynarioides strain JFW-HI SEQ_119084, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4229
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35


Found at i:2313 original size:25 final size:24

Alignment explanation


    Indices: 2259--2314  Score: 58
    Period size: 25  Copynumber: 2.2  Consensus size: 24

       2249 CAAAATTCAT

                              *  * *
       2259 TTAATTTAATTATTTTTTTATTTT
          1 TTAATTTAATTATTTTTTAATATA

                    *                 
       2283 TATAATTTGATTATTTTTTAATAATA
          1 T-TAATTTAATTATTTTTTAAT-ATA

                  
       2309 TTAATT
          1 TTAATT

       2315 AATCCATGTT


Statistics
Matches: 26,  Mismatches: 4, Indels: 3
        0.79            0.12        0.09

Matches are distributed among these distances:
  24    1  0.04
  25   23  0.88
  26    2  0.08

ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66


Consensus pattern (24 bp):   
TTAATTTAATTATTTTTTAATATA
Done.