Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005212.1 Kokia drynarioides strain JFW-HI SEQ_119085, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8910
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35


Found at i:1391 original size:15 final size:14

Alignment explanation


    Indices: 1366--1404  Score: 55
    Period size: 13  Copynumber: 2.9  Consensus size: 14

       1356 TTCAATTTTC

                          
       1366 TTTT-AATAATAAA
          1 TTTTAAATAATAAA

                           
       1379 TTTTAAGATAAT-AA
          1 TTTTAA-ATAATAAA

                        
       1393 TTTTAAATAATA
          1 TTTTAAATAATA

       1405 TTCTTCATAT


Statistics
Matches: 23,  Mismatches: 0, Indels: 5
        0.82            0.00        0.18

Matches are distributed among these distances:
  13    9  0.39
  14    9  0.39
  15    5  0.22

ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46


Consensus pattern (14 bp):   
TTTTAAATAATAAA

Found at i:5286 original size:17 final size:17

Alignment explanation


    Indices: 5264--5311  Score: 66
    Period size: 16  Copynumber: 3.0  Consensus size: 17

       5254 TTAAGTTGTA

                           * 
       5264 ATTAATTTAAAATTTTT
          1 ATTAATTTAAAATTTAT

                             
       5281 ATTAA-TT-AAATTTAT
          1 ATTAATTTAAAATTTAT

                             
       5296 -TTAATTTAAAATTTAT
          1 ATTAATTTAAAATTTAT

       5312 TCTCATTCCA


Statistics
Matches: 28,  Mismatches: 1, Indels: 5
        0.82            0.03        0.15

Matches are distributed among these distances:
  14    4  0.14
  15    9  0.32
  16   10  0.36
  17    5  0.18

ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56


Consensus pattern (17 bp):   
ATTAATTTAAAATTTAT

Done.