Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005214.1 Kokia drynarioides strain JFW-HI SEQ_119087, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7020
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32


Found at i:2369 original size:6 final size:6

Alignment explanation


    Indices: 2358--2453  Score: 147
    Period size: 6  Copynumber: 16.0  Consensus size: 6

       2348 TAAATAAATA

                                                                   
       2358 AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT
          1 AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT

                                  *      *      *      *      *    
       2406 AATAAT AATAAT AATAAT AGTAAT AGTAAT AGTAAT AGTAAT AGTAAT
          1 AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT

       2454 GTAAATATTG


Statistics
Matches: 89,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
   6   89  1.00

ACGTcount: A:0.61, C:0.00, G:0.05, T:0.33


Consensus pattern (6 bp):   
AATAAT

Done.