Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005219.1 Kokia drynarioides strain JFW-HI SEQ_119099, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 675

Length: 1125
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33


Found at i:851 original size:23 final size:23

Alignment explanation


    Indices: 750--849  Score: 128
    Period size: 23  Copynumber: 4.3  Consensus size: 23

        740 AAACTAGCGC

                               *   
        750 GCTCTCTGATTAGCACTGTATGT
          1 GCTCTCTGATTAGCACTGTGTGT

               *             *     
        773 GCTATCTGATTAGCACTTTGTGT
          1 GCTCTCTGATTAGCACTGTGTGT

                     *   *   *     
        796 GCTCTCTGACTAGTACTTTGTGT
          1 GCTCTCTGATTAGCACTGTGTGT

            *       *              
        819 ACTCTCTGTTTAGCACTGTGTGT
          1 GCTCTCTGATTAGCACTGTGTGT

                    
        842 GCTCTCTG
          1 GCTCTCTG

        850 TTGTCCAGCA


Statistics
Matches: 65,  Mismatches: 12, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  23   65  1.00

ACGTcount: A:0.14, C:0.22, G:0.22, T:0.42


Consensus pattern (23 bp):   
GCTCTCTGATTAGCACTGTGTGT
Done.