Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005227.1 Kokia drynarioides strain JFW-HI SEQ_119110, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2452
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37


Found at i:29 original size:17 final size:18

Alignment explanation


    Indices: 1--83  Score: 111
    Period size: 17  Copynumber: 4.8  Consensus size: 18

                 *            
          1 TAAAATAAATTTAAATTT
          1 TAAAACAAATTTAAATTT

                              
         19 T-AAACAAATTT-AATTT
          1 TAAAACAAATTTAAATTT

                 *            
         35 TAAAATAAATTTAAATTT
          1 TAAAACAAATTTAAATTT

                              
         53 T-AAACAAATTT-AATTT
          1 TAAAACAAATTTAAATTT

                 *         
         69 TAAAATAAATTTAAA
          1 TAAAACAAATTTAAA

         84 GGGAGTATGG


Statistics
Matches: 57,  Mismatches: 4, Indels: 8
        0.83            0.06        0.12

Matches are distributed among these distances:
  16   12  0.21
  17   36  0.63
  18    9  0.16

ACGTcount: A:0.55, C:0.02, G:0.00, T:0.42


Consensus pattern (18 bp):   
TAAAACAAATTTAAATTT

Found at i:44 original size:34 final size:34

Alignment explanation


    Indices: 1--83  Score: 166
    Period size: 34  Copynumber: 2.4  Consensus size: 34

                                              
          1 TAAAATAAATTTAAATTTTAAACAAATTTAATTT
          1 TAAAATAAATTTAAATTTTAAACAAATTTAATTT

                                              
         35 TAAAATAAATTTAAATTTTAAACAAATTTAATTT
          1 TAAAATAAATTTAAATTTTAAACAAATTTAATTT

                           
         69 TAAAATAAATTTAAA
          1 TAAAATAAATTTAAA

         84 GGGAGTATGG


Statistics
Matches: 49,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  34   49  1.00

ACGTcount: A:0.55, C:0.02, G:0.00, T:0.42


Consensus pattern (34 bp):   
TAAAATAAATTTAAATTTTAAACAAATTTAATTT
Done.