Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000523.1 Kokia drynarioides strain JFW-HI SEQ_111412, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9068
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.34

Warning! 66 characters in sequence are not A, C, G, or T


Found at i:1685 original size:42 final size:42

Alignment explanation


    Indices: 1626--1711  Score: 163
    Period size: 42  Copynumber: 2.0  Consensus size: 42

       1616 TTATATCAAG

                                                      
       1626 TTAGTCTTATTCGTTTCTTCAACAATGAAATCTTTTTCATTC
          1 TTAGTCTTATTCGTTTCTTCAACAATGAAATCTTTTTCATTC

                                                  *   
       1668 TTAGTCTTATTCGTTTCTTCAACAATGAAATCTTTTTCGTTC
          1 TTAGTCTTATTCGTTTCTTCAACAATGAAATCTTTTTCATTC

              
       1710 TT
          1 TT

       1712 CTCTTTTTTC


Statistics
Matches: 43,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  42   43  1.00

ACGTcount: A:0.22, C:0.19, G:0.08, T:0.51


Consensus pattern (42 bp):   
TTAGTCTTATTCGTTTCTTCAACAATGAAATCTTTTTCATTC
Done.