Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005238.1 Kokia drynarioides strain JFW-HI SEQ_119126, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3922
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.37


Found at i:2592 original size:7 final size:7

Alignment explanation


    Indices: 2580--2608  Score: 51
    Period size: 7  Copynumber: 4.3  Consensus size: 7

       2570 ATCTGCACCA

                   
       2580 AATATAT
          1 AATATAT

                   
       2587 AATATAT
          1 AATATAT

                   
       2594 AATATAT
          1 AATATAT

                   
       2601 AATA-AT
          1 AATATAT

              
       2607 AA
          1 AA

       2609 AAACAAATTT


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   6    4  0.18
   7   18  0.82

ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38


Consensus pattern (7 bp):   
AATATAT
Done.