Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000524.1 Kokia drynarioides strain JFW-HI SEQ_111413, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 969

Length: 1616
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35


Found at i:319 original size:18 final size:18

Alignment explanation


    Indices: 296--335  Score: 62
    Period size: 18  Copynumber: 2.2  Consensus size: 18

        286 AAAAGTTCGA

                   *          
        296 CAAGTTCGGAAGTTCGTC
          1 CAAGTTCAGAAGTTCGTC

                      *       
        314 CAAGTTCAGATGTTCGTC
          1 CAAGTTCAGAAGTTCGTC

                
        332 CAAG
          1 CAAG

        336 AACCAAGAGA


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28


Consensus pattern (18 bp):   
CAAGTTCAGAAGTTCGTC
Done.