Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005244.1 Kokia drynarioides strain JFW-HI SEQ_119142, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 613

Length: 1023
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39


Found at i:1019 original size:18 final size:19

Alignment explanation


    Indices: 977--1020  Score: 56
    Period size: 18  Copynumber: 2.4  Consensus size: 19

        967 TTTATTTATT

                               
        977 TTAAATTTTAAATCTGAAA
          1 TTAAATTTTAAATCTGAAA

            *              *   
        996 AT-AATTTTAAA-CTTAAA
          1 TTAAATTTTAAATCTGAAA

                    
       1013 TTAAATTT
          1 TTAAATTT

       1021 AAA


Statistics
Matches: 21,  Mismatches: 3, Indels: 3
        0.78            0.11        0.11

Matches are distributed among these distances:
  17    6  0.29
  18   14  0.67
  19    1  0.05

ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45


Consensus pattern (19 bp):   
TTAAATTTTAAATCTGAAA

Found at i:1023 original size:17 final size:18

Alignment explanation


    Indices: 977--1023  Score: 51
    Period size: 17  Copynumber: 2.6  Consensus size: 18

        967 TTTATTTATT

                               
        977 TTAAATTTTAAATCTGAAA
          1 TTAAA-TTTAAATCTGAAA

            *   *         *   
        996 ATAATTTTAAA-CTTAAA
          1 TTAAATTTAAATCTGAAA

                       
       1013 TTAAATTTAAA
          1 TTAAATTTAAA


Statistics
Matches: 23,  Mismatches: 5, Indels: 2
        0.77            0.17        0.07

Matches are distributed among these distances:
  17   14  0.61
  18    6  0.26
  19    3  0.13

ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43


Consensus pattern (18 bp):   
TTAAATTTAAATCTGAAA
Done.