Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005251.1 Kokia drynarioides strain JFW-HI SEQ_119150, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1894
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34


Found at i:81 original size:19 final size:20

Alignment explanation


    Indices: 42--81  Score: 64
    Period size: 20  Copynumber: 2.0  Consensus size: 20

         32 TCTTTATATA

                     *          
         42 TTTTTAAAATTGATTTCATG
          1 TTTTTAAAAGTGATTTCATG

                                
         62 TTTTTAAAAGTGATTT-ATG
          1 TTTTTAAAAGTGATTTCATG

             
         81 T
          1 T

         82 ATAGTTTTAT


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  19    4  0.21
  20   15  0.79

ACGTcount: A:0.30, C:0.03, G:0.12, T:0.55


Consensus pattern (20 bp):   
TTTTTAAAAGTGATTTCATG
Done.