Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005257.1 Kokia drynarioides strain JFW-HI SEQ_119162, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2303
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.37


Found at i:2136 original size:27 final size:25

Alignment explanation


    Indices: 2106--2164  Score: 73
    Period size: 25  Copynumber: 2.3  Consensus size: 25

       2096 TATATTAACA

                        *              
       2106 TAAATATGGTAATATTTAGTCACTAGT
          1 TAAATAT-GTAACATTT-GTCACTAGT

                 *   *               
       2133 TAAATGTGTGACATTTGTCACTAGT
          1 TAAATATGTAACATTTGTCACTAGT

                   
       2158 TAAATAT
          1 TAAATAT

       2165 AATAATATCT


Statistics
Matches: 28,  Mismatches: 4, Indels: 2
        0.82            0.12        0.06

Matches are distributed among these distances:
  25   15  0.54
  26    7  0.25
  27    6  0.21

ACGTcount: A:0.36, C:0.08, G:0.15, T:0.41


Consensus pattern (25 bp):   
TAAATATGTAACATTTGTCACTAGT
Done.