Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005266.1 Kokia drynarioides strain JFW-HI SEQ_119177, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5370
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31


Found at i:4183 original size:30 final size:30

Alignment explanation


    Indices: 4147--4208  Score: 106
    Period size: 30  Copynumber: 2.1  Consensus size: 30

       4137 TACATTTCAA

                                  *       
       4147 TCTCTCAACTTTGAAAATGTGATAAAATAG
          1 TCTCTCAACTTTGAAAATGTGACAAAATAG

                   *                      
       4177 TCTCTCAGCTTTGAAAATGTGACAAAATAG
          1 TCTCTCAACTTTGAAAATGTGACAAAATAG

              
       4207 TC
          1 TC

       4209 CTTTTCCATC


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  30   30  1.00

ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32


Consensus pattern (30 bp):   
TCTCTCAACTTTGAAAATGTGACAAAATAG

Found at i:5352 original size:30 final size:31

Alignment explanation


    Indices: 5288--5359  Score: 94
    Period size: 30  Copynumber: 2.4  Consensus size: 31

       5278 ACAACAAGTG

                *                      *   
       5288 GACTATTTTGTCACTTTTCGATAACTTTAGT
          1 GACTGTTTTGTCACTTTTCGATAACTTGAGT

                                     *      
       5319 GACTGTTTTGTCACATTTTC-A-AAGTTGAGT
          1 GACTGTTTTGTCAC-TTTTCGATAACTTGAGT

                       
       5349 GACTGTTTTGT
          1 GACTGTTTTGT

       5360 TAAATGTGAC


Statistics
Matches: 37,  Mismatches: 3, Indels: 3
        0.86            0.07        0.07

Matches are distributed among these distances:
  30   18  0.49
  31   14  0.38
  32    5  0.14

ACGTcount: A:0.21, C:0.14, G:0.18, T:0.47


Consensus pattern (31 bp):   
GACTGTTTTGTCACTTTTCGATAACTTGAGT
Done.