Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01005270.1 Kokia drynarioides strain JFW-HI SEQ_119184, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3602
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Warning! 57 characters in sequence are not A, C, G, or T
Found at i:334 original size:23 final size:24
Alignment explanation
Indices: 299--343 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
289 ATGGGTCAAA
299 TTGGGCCTCAA-TTGTAATTTTAT
1 TTGGGCCTCAATTTGTAATTTTAT
* * *
322 TTGGGCTTGAATTTGTATTTTT
1 TTGGGCCTCAATTTGTAATTTT
344 GGACTTTTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 9 0.50
24 9 0.50
ACGTcount: A:0.18, C:0.09, G:0.20, T:0.53
Consensus pattern (24 bp):
TTGGGCCTCAATTTGTAATTTTAT
Found at i:958 original size:39 final size:39
Alignment explanation
Indices: 896--1138 Score: 161
Period size: 39 Copynumber: 6.3 Consensus size: 39
886 AATGATAGCC
* * *
896 ATCTGCCCCATGATCG-GGTAAGAGATTGGCTGATGATG
1 ATCTGCCCCAGGCTCGAGGTAAGAGATTGACTGATGATG
* * * *
934 ATCTGCCTCAGGCTCGANGTAAGAGATCGAATGACTGCA-G
1 ATCTGCCCCAGGCTCGAGGTAAGAGATTGACTGA-TG-ATG
* * * *
974 -TCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATAATG
1 ATCTGCCCCAGGCTCGAGGTAAGAGATTGACTGATGATG
* * * * ** * * * **
1012 ATCTGCCTCGGGCTTGAGATAAGAGACCGAATGGTTAAA
1 ATCTGCCCCAGGCTCGAGGTAAGAGATTGACTGATGATG
* * *
1051 ATCTGCCCCAAGCTCGGGGTAAGAGATTGATTGATGATG
1 ATCTGCCCCAGGCTCGAGGTAAGAGATTGACTGATGATG
* * * *
1090 ATCTGCCCCAGGCTCG-GGCTAAAAGATTGGCTAATGGTG
1 ATCTGCCCCAGGCTCGAGG-TAAGAGATTGACTGATGATG
*
1129 ATCTACCCCA
1 ATCTGCCCCA
1139 TGTTGGGGGT
Statistics
Matches: 150, Mismatches: 49, Indels: 11
0.71 0.23 0.05
Matches are distributed among these distances:
37 1 0.01
38 17 0.11
39 128 0.85
40 3 0.02
41 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.23
Consensus pattern (39 bp):
ATCTGCCCCAGGCTCGAGGTAAGAGATTGACTGATGATG
Found at i:1013 original size:78 final size:78
Alignment explanation
Indices: 896--1105 Score: 271
Period size: 78 Copynumber: 2.7 Consensus size: 78
886 AATGATAGCC
* *
896 ATCTGCCCCATGATC-GGGTAAGAGATTGGCTGATGATGATCTGCCTCAGGCTCGANG-TAAGAG
1 ATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATGATGATCTGCCTCAGGCTCGA-GATAAGAG
* **
959 ATCGAATGACTGCA
65 ACCGAATGACTAAA
* * * *
973 GTCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATAATGATCTGCCTCGGGCTTGAGATAAGAGA
1 ATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATGATGATCTGCCTCAGGCTCGAGATAAGAGA
**
1038 CCGAATGGTTAAA
66 CCGAATGACTAAA
** *
1051 ATCTGCCCCAAGCTCGGGGTAAGAGATTGATTGATGATGATCTGCCCCAGGCTCG
1 ATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATGATGATCTGCCTCAGGCTCG
1106 GGCTAAAAGA
Statistics
Matches: 113, Mismatches: 18, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
77 13 0.12
78 100 0.88
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.23
Consensus pattern (78 bp):
ATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATGATGATCTGCCTCAGGCTCGAGATAAGAGA
CCGAATGACTAAA
Found at i:1521 original size:49 final size:49
Alignment explanation
Indices: 1468--1612 Score: 120
Period size: 49 Copynumber: 3.0 Consensus size: 49
1458 ACCGGGTTCA
1468 CCGTTGCGTTCATAACCTTTCCCTCCATATCTTTGTGGTACTGGATTCG
1 CCGTTGCGTTCATAACCTTTCCCTCCATATCTTTGTGGTACTGGATTCG
* * * * * * * *
1517 CCGTTACG-ACTTAAGTCTTTCCCTTCAT-GCTTTCGAGGTACAAGG-TTCG
1 CCGTTGCGTTCATAA-CCTTTCCCTCCATATCTTT-GTGGTAC-TGGATTCG
* *
1566 CCGTTGCGACTT-A-AACCTTTCCCTCCATATCCTCGTGGTACTGGATT
1 CCGTTGCG--TTCATAACCTTTCCCTCCATATCTTTGTGGTACTGGATT
1613 TACCGTTACA
Statistics
Matches: 70, Mismatches: 18, Indels: 16
0.67 0.17 0.15
Matches are distributed among these distances:
48 10 0.14
49 54 0.77
50 6 0.09
ACGTcount: A:0.17, C:0.29, G:0.19, T:0.36
Consensus pattern (49 bp):
CCGTTGCGTTCATAACCTTTCCCTCCATATCTTTGTGGTACTGGATTCG
Found at i:1604 original size:98 final size:98
Alignment explanation
Indices: 1481--3602 Score: 2534
Period size: 98 Copynumber: 21.6 Consensus size: 98
1471 TTGCGTTCAT
** * * * * *
1481 AACCTTTCCCTCCATATCTTTGTGGTACTGGATTCGCCGTTACGACTTAAGTCTTTCCCTTCATG
1 AACCTTTCCCTCTGTGTCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
1546 CTT-TCGAGGTACAAGGTTCGCCGTTGCGACTTA
66 CTTCT-GAGGTACAAGGTTCGCCGTTGCGACTTA
** * * ** * * *
1579 AACCTTTCCCTCCATATCCTCGTGGTACTGGATTTACCGTTACAGCTTAAGTCTTTCCCTTCATG
1 AACCTTTCCCTCTGTGTCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
*
1644 CTTCTGAGGTACAAGGTTCGCCGTTTCGACTTA
66 CTTCTGAGGTACAAGGTTCGCCGTTGCGACTTA
* * * * ** *
1677 AACCTTTCCCTCTATGTCTTCGTGATACTAGATTCCCCGTTGCAACTTAAATATTTCCCTTCATG
1 AACCTTTCCCTCTGTGTCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
* *
1742 CTTCTAAGGTACAAGGTTCGCCGTTACGACTTA
66 CTTCTGAGGTACAAGGTTCGCCGTTGCGACTTA
* *
1775 AACCTTTCCCTCTGTGTCTTCGTGGTACTGGATTCGCCGTTACGGCTTAAATCTTTCCTTTCATG
1 AACCTTTCCCTCTGTGTCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
* *
1840 -TCTCTGAGGTACAAGGTTCACCGTTACGACTTA
66 CT-TCTGAGGTACAAGGTTCGCCGTTGCGACTTA
* * * * *
1873 AACCTTTCCCCCTGTGTCTTCGTGGTACTGGATTCACTGTTTACGGCTTAAATCTTTCCCTTCAC
1 AACCTTTCCCTCTGTGTCTTCGTGGTACTGGATTCGCCG-TTGCGGCTTAAATCTTTCCCTTCAT
*
1938 G-TCTCTGAGGTACAAGGTTCGCTGTTGCGACTTA
65 GCT-TCTGAGGTACAAGGTTCGCCGTTGCGACTTA
* * * *
1972 AATCTTTCCCCCTGTGTCTTCGTGGTACTGGATTCACTGTTGCGGCTTAAATCTTTCCCTTCATG
1 AACCTTTCCCTCTGTGTCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
**
2037 CTTCTGAGGTACAAGGTTCGCCACTGCGACTTA
66 CTTCTGAGGTACAAGGTTCGCCGTTGCGACTTA
*
2070 AACCTTTCCCTCTGTGTCTTTGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
1 AACCTTTCCCTCTGTGTCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
* *
2135 CTTCTGAGGTACAAGGTTCACCATTGCGACTTA
66 CTTCTGAGGTACAAGGTTCGCCGTTGCGACTTA
* * * *
2168 AACCTTTCCCTCTATGTCTTCGTGGTATTGGATTTGTCGTTGCGGCTTAAATCTTTCCCTTCATG
1 AACCTTTCCCTCTGTGTCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
* ** *********
2233 CTTCTAAGGTACAAGGTTTACCGTANNNNNNNN
66 CTTCTGAGGTACAAGGTTCGCCGTTGCGACTTA
***********************************************
2266 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATCTTTCCCTTCATG
1 AACCTTTCCCTCTGTGTCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
2331 CTTCTGAGGTACAAGGTTCGCCGTTGCGACTTA
66 CTTCTGAGGTACAAGGTTCGCCGTTGCGACTTA
* * *
2364 AACCTTTCCCTCTATGTCTTCGTGGTACTGGATTCGTCGTTGTGGCTTAAATCTTTCCCTTCATG
1 AACCTTTCCCTCTGTGTCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
* ** *
2429 CTTCTGAGGTACAATGTTCGCTATTGTGACTTA
66 CTTCTGAGGTACAAGGTTCGCCGTTGCGACTTA
* *
2462 AACCTTTGCCTCTGTGTCTTCATGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
1 AACCTTTCCCTCTGTGTCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
* *
2527 CTTCTGAGGTATAAGGTTCGCCATTGCGACTTA
66 CTTCTGAGGTACAAGGTTCGCCGTTGCGACTTA
* * *
2560 AACCTTTCCCTCTATGTCTTCGTGGTACTGGATTCGTCTTTGCGGCTTAAATCTTTCCCTTCATG
1 AACCTTTCCCTCTGTGTCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
* ** *
2625 CTTCTAAGGTACAAGGTTTACCGTAGCGACTTA
66 CTTCTGAGGTACAAGGTTCGCCGTTGCGACTTA
* * *
2658 AACCTTTCCCTCTGTGTCTTCGTGGTACTGGATTCGTCGTTACGGTTTAAATCTTTCCCTTCATG
1 AACCTTTCCCTCTGTGTCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
2723 CTTCTGAGGTACAAGGTTCGCCGTTGCGACTTA
66 CTTCTGAGGTACAAGGTTCGCCGTTGCGACTTA
* * * *
2756 AACCTTTCCCTCTATGTCTTCGTGGTACTGGATTCGTCGTTGTGGCTTAAACCTTTCCCTTCATG
1 AACCTTTCCCTCTGTGTCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
*
2821 CTTCTGAGGTACAAGGTTCGCCGTTGTGACTTA
66 CTTCTGAGGTACAAGGTTCGCCGTTGCGACTTA
* * *
2854 ATCCTTTGCCTCTGTGTCTTCGTGGTACTGGATTCGCCCTTGCGGCTTAAATCTTTCCCTTCATG
1 AACCTTTCCCTCTGTGTCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
* *
2919 TCTT-TAAGGTACAAGGTTCGCCGTTGCTACTTA
66 -CTTCTGAGGTACAAGGTTCGCCGTTGCGACTTA
* *
2952 AACCTTTCTCCT-TGTGTCTTCGTGGTACTGGATTCGCTGTTGCAGCTTAAATCTTTCCCTTCAT
1 AACCTTTC-CCTCTGTGTCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCAT
* *
3016 GCTTCTTAGGTACAAGGTTTGCCGTTGCGACTTA
65 GCTTCTGAGGTACAAGGTTCGCCGTTGCGACTTA
** ** * *
3050 AACCTTTCCCTCTGTGTCTTCGTGGTACTGGATTCATCGTTATGGTTTAAATCTTTCCCTTCATT
1 AACCTTTCCCTCTGTGTCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
3115 CTTCTGAGGTACAAGGTTCGCCGTTGCGACTTA
66 CTTCTGAGGTACAAGGTTCGCCGTTGCGACTTA
* * * *
3148 AACCTTTCCCTCTATGTCTTCGTGGTACTGGATTCGTCGTTGTGGCTTAAATATTTCCCTTCATG
1 AACCTTTCCCTCTGTGTCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
*
3213 CTTCTGAGGTACAAGGTTCGCCGTTGTGACTTA
66 CTTCTGAGGTACAAGGTTCGCCGTTGCGACTTA
* * *
3246 ATCCTTTCCCTCTGTGTCTTCGTGGTACTAGATTCACCGTTGCGGCTTAAATCTTTCCCTTCATG
1 AACCTTTCCCTCTGTGTCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
* * *
3311 -TCTCTAAGGTACAAGGTTCCCCGTTGCTACTTA
66 CT-TCTGAGGTACAAGGTTCGCCGTTGCGACTTA
* * * *
3344 AACCTTTCCC-CTTATGTCTTCGTGGTACTGGATTCGTCNTTGTGGCTTAAATCTTTCCCTTCAT
1 AACCTTTCCCTC-TGTGTCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCAT
*
3408 GCTTCTGAGGTACAAGGTTCGCCGTTGTGACTTA
65 GCTTCTGAGGTACAAGGTTCGCCGTTGCGACTTA
* * *
3442 ATCCTTTCCCTCTGTGTCTTCGTGGTACTGGATTTGCCGTTGCGGCTTAAATATTTCCCTTCATG
1 AACCTTTCCCTCTGTGTCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
* * *
3507 -TCTCTAAGGTAAAAGGTTCGCCGTTGCTACTTA
66 CT-TCTGAGGTACAAGGTTCGCCGTTGCGACTTA
**
3540 AACCTTTCCC-CTTGTGTCTTCGTGGTACTGGATTCGCCGTTGTAGCTTAAATCTTTCCCTTCA
1 AACCTTTCCCTC-TGTGTCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCA
Statistics
Matches: 1724, Mismatches: 286, Indels: 28
0.85 0.14 0.01
Matches are distributed among these distances:
97 11 0.01
98 1611 0.93
99 102 0.06
ACGTcount: A:0.16, C:0.25, G:0.19, T:0.37
Consensus pattern (98 bp):
AACCTTTCCCTCTGTGTCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
CTTCTGAGGTACAAGGTTCGCCGTTGCGACTTA
Found at i:1619 original size:49 final size:49
Alignment explanation
Indices: 1484--3599 Score: 939
Period size: 49 Copynumber: 43.2 Consensus size: 49
1474 CGTTCATAAC
* * * *
1484 CTTTCCCTCCATATCTTTGTGGTACTGGATTCGCCGTTACGACTTAAGT
1 CTTTCCCTCCATGTCTTCGTGGTACTGGATTCGCCGTTGCGACTTAAAT
* * * *
1533 CTTTCCCTTCATG-CTTTCGAGGTACAAGG-TTCGCCGTTGCGACTTAAAC
1 CTTTCCCTCCATGTC-TTCGTGGTAC-TGGATTCGCCGTTGCGACTTAAAT
* * ** * *
1582 CTTTCCCTCCATATCCTCGTGGTACTGGATTTACCGTTAC-AGCTTAAGT
1 CTTTCCCTCCATGTCTTCGTGGTACTGGATTCGCCGTTGCGA-CTTAAAT
* * * * *
1631 CTTTCCCTTCATG-CTTCTGAGGTACAAGG-TTCGCCGTTTCGACTTAAAC
1 CTTTCCCTCCATGTCTTC-GTGGTAC-TGGATTCGCCGTTGCGACTTAAAT
* * * * *
1680 CTTTCCCTCTATGTCTTCGTGATACTAGATTCCCCGTTGCAACTTAAAT
1 CTTTCCCTCCATGTCTTCGTGGTACTGGATTCGCCGTTGCGACTTAAAT
* * * * *
1729 ATTTCCCTTCATG-CTTC-TAAGGTACAAGG-TTCGCCGTTACGACTTAAAC
1 CTTTCCCTCCATGTCTTCGT--GGTAC-TGGATTCGCCGTTGCGACTTAAAT
** * *
1778 CTTTCCCTCTGTGTCTTCGTGGTACTGGATTCGCCGTTACGGCTTAAAT
1 CTTTCCCTCCATGTCTTCGTGGTACTGGATTCGCCGTTGCGACTTAAAT
* * * * * * *
1827 CTTTCCTTTCATGTC-TCTGAGGTACAAGG-TTCACCGTTACGACTTAAAC
1 CTTTCCCTCCATGTCTTC-GTGGTAC-TGGATTCGCCGTTGCGACTTAAAT
* * * * *
1876 CTTTCCC-CCTGTGTCTTCGTGGTACTGGATTCACTGTTTACGGCTTAAAT
1 CTTTCCCTCC-ATGTCTTCGTGGTACTGGATTCGCCG-TTGCGACTTAAAT
* * * * *
1926 CTTTCCCTTCACGTC-TCTGAGGTACAAGG-TTCGCTGTTGCGACTTAAAT
1 CTTTCCCTCCATGTCTTC-GTGGTAC-TGGATTCGCCGTTGCGACTTAAAT
* * * *
1975 CTTTCCC-CCTGTGTCTTCGTGGTACTGGATTCACTGTTGCGGCTTAAAT
1 CTTTCCCTCC-ATGTCTTCGTGGTACTGGATTCGCCGTTGCGACTTAAAT
* * * ** *
2024 CTTTCCCTTCATG-CTTCTGAGGTACAAGG-TTCGCCACTGCGACTTAAAC
1 CTTTCCCTCCATGTCTTC-GTGGTAC-TGGATTCGCCGTTGCGACTTAAAT
** * *
2073 CTTTCCCTCTGTGTCTTTGTGGTACTGGATTCGCCGTTGCGGCTTAAAT
1 CTTTCCCTCCATGTCTTCGTGGTACTGGATTCGCCGTTGCGACTTAAAT
* * * * * *
2122 CTTTCCCTTCATG-CTTCTGAGGTACAAGG-TTCACCATTGCGACTTAAAC
1 CTTTCCCTCCATGTCTTC-GTGGTAC-TGGATTCGCCGTTGCGACTTAAAT
* * * * *
2171 CTTTCCCTCTATGTCTTCGTGGTATTGGATTTGTCGTTGCGGCTTAAAT
1 CTTTCCCTCCATGTCTTCGTGGTACTGGATTCGCCGTTGCGACTTAAAT
* * ** ************
2220 CTTTCCCTTCATG-CTTC-TAAGGTACAAGG-TTTACCGTANNNNNNNNNNN
1 CTTTCCCTCCATGTCTTCGT--GGTAC-TGGATTCGCCGTTGCGACTTAAAT
********************************************
2269 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAT
1 CTTTCCCTCCATGTCTTCGTGGTACTGGATTCGCCGTTGCGACTTAAAT
* * * *
2318 CTTTCCCTTCATG-CTTCTGAGGTACAAGG-TTCGCCGTTGCGACTTAAAC
1 CTTTCCCTCCATGTCTTC-GTGGTAC-TGGATTCGCCGTTGCGACTTAAAT
* * * *
2367 CTTTCCCTCTATGTCTTCGTGGTACTGGATTCGTCGTTGTGGCTTAAAT
1 CTTTCCCTCCATGTCTTCGTGGTACTGGATTCGCCGTTGCGACTTAAAT
* * ** * *
2416 CTTTCCCTTCATG-CTTCTGAGGTACAAT-G-TTCGCTATTGTGACTTAAAC
1 CTTTCCCTCCATGTCTTC-GTGGTAC--TGGATTCGCCGTTGCGACTTAAAT
* ** * *
2465 CTTTGCCTCTGTGTCTTCATGGTACTGGATTCGCCGTTGCGGCTTAAAT
1 CTTTCCCTCCATGTCTTCGTGGTACTGGATTCGCCGTTGCGACTTAAAT
* * * *
2514 CTTTCCCTTCATG-CTTCTGAGGTA-TAAGG-TTCGCCATTGCGACTTAAAC
1 CTTTCCCTCCATGTCTTC-GTGGTACT--GGATTCGCCGTTGCGACTTAAAT
* * * *
2563 CTTTCCCTCTATGTCTTCGTGGTACTGGATTCGTCTTTGCGGCTTAAAT
1 CTTTCCCTCCATGTCTTCGTGGTACTGGATTCGCCGTTGCGACTTAAAT
* * ** * *
2612 CTTTCCCTTCATG-CTTC-TAAGGTACAAGG-TTTACCGTAGCGACTTAAAC
1 CTTTCCCTCCATGTCTTCGT--GGTAC-TGGATTCGCCGTTGCGACTTAAAT
** * * **
2661 CTTTCCCTCTGTGTCTTCGTGGTACTGGATTCGTCGTTACGGTTTAAAT
1 CTTTCCCTCCATGTCTTCGTGGTACTGGATTCGCCGTTGCGACTTAAAT
* * * *
2710 CTTTCCCTTCATG-CTTCTGAGGTACAAGG-TTCGCCGTTGCGACTTAAAC
1 CTTTCCCTCCATGTCTTC-GTGGTAC-TGGATTCGCCGTTGCGACTTAAAT
* * * * *
2759 CTTTCCCTCTATGTCTTCGTGGTACTGGATTCGTCGTTGTGGCTTAAAC
1 CTTTCCCTCCATGTCTTCGTGGTACTGGATTCGCCGTTGCGACTTAAAT
* * * *
2808 CTTTCCCTTCATG-CTTCTGAGGTACAAGG-TTCGCCGTTGTGACTT-AAT
1 CTTTCCCTCCATGTCTTC-GTGGTAC-TGGATTCGCCGTTGCGACTTAAAT
* ** * *
2856 CCTTTGCCTCTGTGTCTTCGTGGTACTGGATTCGCCCTTGCGGCTTAAAT
1 -CTTTCCCTCCATGTCTTCGTGGTACTGGATTCGCCGTTGCGACTTAAAT
* *** * * *
2906 CTTTCCCTTCATGTCTTTAAGGTACAAGG-TTCGCCGTTGCTACTTAAAC
1 CTTTCCCTCCATGTCTTCGTGGTAC-TGGATTCGCCGTTGCGACTTAAAT
** *
2955 CTTTCTCCT-TGTGTCTTCGTGGTACTGGATTCGCTGTTGC-AGCTTAAAT
1 CTTTC-CCTCCATGTCTTCGTGGTACTGGATTCGCCGTTGCGA-CTTAAAT
* * * * *
3004 CTTTCCCTTCATG-CTTCTTAGGTACAAGG-TTTGCCGTTGCGACTTAAAC
1 CTTTCCCTCCATGTCTTCGT-GGTAC-TGGATTCGCCGTTGCGACTTAAAT
** ** ** **
3053 CTTTCCCTCTGTGTCTTCGTGGTACTGGATTCATCGTTATGGTTTAAAT
1 CTTTCCCTCCATGTCTTCGTGGTACTGGATTCGCCGTTGCGACTTAAAT
* * * *
3102 CTTTCCCTTCAT-TCTTCTGAGGTACAAGG-TTCGCCGTTGCGACTTAAAC
1 CTTTCCCTCCATGTCTTC-GTGGTAC-TGGATTCGCCGTTGCGACTTAAAT
* * * *
3151 CTTTCCCTCTATGTCTTCGTGGTACTGGATTCGTCGTTGTGGCTTAAAT
1 CTTTCCCTCCATGTCTTCGTGGTACTGGATTCGCCGTTGCGACTTAAAT
* * * * *
3200 ATTTCCCTTCATG-CTTCTGAGGTACAAGG-TTCGCCGTTGTGACTT-AAT
1 CTTTCCCTCCATGTCTTC-GTGGTAC-TGGATTCGCCGTTGCGACTTAAAT
** * * *
3248 CCTTTCCCTCTGTGTCTTCGTGGTACTAGATTCACCGTTGCGGCTTAAAT
1 -CTTTCCCTCCATGTCTTCGTGGTACTGGATTCGCCGTTGCGACTTAAAT
* * * * *
3298 CTTTCCCTTCATGTC-TC-TAAGGTACAAGG-TTCCCCGTTGCTACTTAAAC
1 CTTTCCCTCCATGTCTTCGT--GGTAC-TGGATTCGCCGTTGCGACTTAAAT
* * * * *
3347 CTTTCCC-CTTATGTCTTCGTGGTACTGGATTCGTCNTTGTGGCTTAAAT
1 CTTTCCCTC-CATGTCTTCGTGGTACTGGATTCGCCGTTGCGACTTAAAT
* * * *
3396 CTTTCCCTTCATG-CTTCTGAGGTACAAGG-TTCGCCGTTGTGACTT-AAT
1 CTTTCCCTCCATGTCTTC-GTGGTAC-TGGATTCGCCGTTGCGACTTAAAT
** * *
3444 CCTTTCCCTCTGTGTCTTCGTGGTACTGGATTTGCCGTTGCGGCTTAAAT
1 -CTTTCCCTCCATGTCTTCGTGGTACTGGATTCGCCGTTGCGACTTAAAT
* * ** * *
3494 ATTTCCCTTCATGTC-TC-TAAGGTAAAAGG-TTCGCCGTTGCTACTTAAAC
1 CTTTCCCTCCATGTCTTCGT--GGT-ACTGGATTCGCCGTTGCGACTTAAAT
** *
3543 CTTTCCC-CTTGTGTCTTCGTGGTACTGGATTCGCCGTTG-TAGCTTAAAT
1 CTTTCCCTC-CATGTCTTCGTGGTACTGGATTCGCCGTTGCGA-CTTAAAT
3592 CTTTCCCT
1 CTTTCCCT
3600 TCA
Statistics
Matches: 1494, Mismatches: 455, Indels: 235
0.68 0.21 0.11
Matches are distributed among these distances:
47 6 0.00
48 119 0.08
49 1210 0.81
50 151 0.10
51 8 0.01
ACGTcount: A:0.16, C:0.25, G:0.19, T:0.37
Consensus pattern (49 bp):
CTTTCCCTCCATGTCTTCGTGGTACTGGATTCGCCGTTGCGACTTAAAT
Done.