Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000528.1 Kokia drynarioides strain JFW-HI SEQ_111418, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3652
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35


Found at i:91 original size:23 final size:23

Alignment explanation


    Indices: 61--107  Score: 94
    Period size: 23  Copynumber: 2.0  Consensus size: 23

         51 TTATCAAAAG

                                   
         61 AAAAAAAGAATTACCCAAACATT
          1 AAAAAAAGAATTACCCAAACATT

                                   
         84 AAAAAAAGAATTACCCAAACATT
          1 AAAAAAAGAATTACCCAAACATT

             
        107 A
          1 A

        108 TATGTGTTTA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.62, C:0.17, G:0.04, T:0.17


Consensus pattern (23 bp):   
AAAAAAAGAATTACCCAAACATT
Done.