Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01005280.1 Kokia drynarioides strain JFW-HI SEQ_119202, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2306
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Found at i:437 original size:217 final size:218
Alignment explanation
Indices: 73--469 Score: 577
Period size: 217 Copynumber: 1.8 Consensus size: 218
63 TGCTCGATAA
* * * * *
73 AATGGATCGTCTCGAATGCTTTAAGGGACCGATGTTATAGAAGAACTCGTAAAAGTTTGACAAGT
1 AATGGACCGTCTCGAATACTTTAAGGAACCAAAGTTATAGAAGAACTCGTAAAAGTTTGACAAGT
* *
138 TTGGAAATTCAGCCAAGAACCAAGGGAGAAACAATTCTCACGTAAATAACTTTTTAAATCGAAGA
66 TTGGAAATTCAGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAACTTTTTAAATCAAAGA
*
203 CCAAAAGATTTTTTACAAAACGACTAACTA-TTTGGACAAAATGATGCGATTTCTCGAGCATGGA
131 CCAAAAGATTTTTTACAAAACGACAAACTATTTTGGACAAAATGATGCGATTTCTCGAGCATGGA
267 ATGTTCGGGAAATTACTCGAAGG
196 ATGTTCGGGAAATTACTCGAAGG
* **
290 AATGGACCGTCTTGAATACTTTAAGGAACCAAAGTTATTTAAGAACTCGTAAAAGTTTGACAAGT
1 AATGGACCGTCTCGAATACTTTAAGGAACCAAAGTTATAGAAGAACTCGTAAAAGTTTGACAAGT
* * *
355 TTGGAAGTTC-GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTTAATTCAAA
66 TTGGAAATTCAG-CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA-CTTTTTAAATCAAA
* * * *
419 GACC-AAA-ATTTGTTTACAATATGACAAACTATTTTGGACCAAATTATGCGA
129 GACCAAAAGATTT-TTTACAAAACGACAAACTATTTTGGACAAAATGATGCGA
470 ATGAATCGTC
Statistics
Matches: 158, Mismatches: 18, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
216 5 0.03
217 121 0.77
218 32 0.20
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (218 bp):
AATGGACCGTCTCGAATACTTTAAGGAACCAAAGTTATAGAAGAACTCGTAAAAGTTTGACAAGT
TTGGAAATTCAGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAACTTTTTAAATCAAAGA
CCAAAAGATTTTTTACAAAACGACAAACTATTTTGGACAAAATGATGCGATTTCTCGAGCATGGA
ATGTTCGGGAAATTACTCGAAGG
Found at i:1249 original size:418 final size:418
Alignment explanation
Indices: 498--2306 Score: 2148
Period size: 418 Copynumber: 4.3 Consensus size: 418
488 TTTAATGGAT
* *
498 CGATTTTATAGAAGAACTCGTAAAAGTTTGACAAGTTTGGAAA-TTCAGCCAAGAACCAAGGGAG
1 CGATGTTATAGAAGAACTCGTAAAAGTTTGACAAGTTT-GAAAGTTCGGCCAAGAACCAAGGGAG
* * * * *
562 AAACAATTCTCACGTAAATAACTTTTTAAATCGAAGACCAAAAGTTTTTTTCAAAACGACTAACT
65 AAACAATTCTCACGTAAATAACTTTTTAAATCAAAGACCAAAAGTTATTTACAAAATGACAAACT
* * * *
627 ATTTGGACAAAATGATGCAATTTCTCGAGCATCGAATGTTCGAGAAATTACTCGAAGGAATGGAC
130 ATTTGGACAAAATGATGCGATTTCCCGAGCATAGAATGTTCGAAAAATTACTCGAAGGAATGGAC
* *
692 CGTCTTGAATA-TTTAAGGAACCAAAGTTATTTAAGAACTCGGAAAAGTTTGACAAGTTCGGAAG
195 CGTCTTGAATACTTTAAGGAACCAAAGTTATTAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAG
* *
756 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTAAATTCAAAGACCAAAAG
260 TTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * *
821 TTGTTTACAAAATGACAAACTA-TTTGGACCATATTATGCTAATGTTCTAAAAATTGCACGAAGG
325 TTGTTTACAAAATGACAAACTATTTTGGACCAAATTATGCGAATGTTCTGAAAATTGCTCGAAGG
*
885 AATGGATCGTCTTGAATACTTTAAGAAAC
390 AATGGATCGTCTTGAATACTTTAAGGAAC
* * * * * ** *
914 CGATGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTTGGAAGCTCGGCCGAGAACCAATAGACA
1 CGATGTTATAGAAGAACTCGTAAAAGTTTGACAAGTTTGAAAGTTCGGCCAAGAACCAAGGGAGA
* * * * * *
979 AATAAATCTCACATAAATAAGTTTTTAAATCGAAGACCAAAAGTTTTTTTTACAAAATGACAAAC
66 AACAATTCTCACGTAAATAACTTTTTAAATCAAAGACCAAAAG--TTATTTACAAAATGACAAAC
* *
1044 TATTTGGACGAAAA-GGTGCGATTTCCCGAGCATAGAATGTTCGAAAAATTGCTCGAAGGAATGG
129 TATTTGGAC-AAAATGATGCGATTTCCCGAGCATAGAATGTTCGAAAAATTACTCGAAGGAATGG
* * * * * * *
1108 ATCGTCATG-ATACTTTAAGGTATCGAAGTTATGAAAGAACTTGTAAAAGTTTGACAAGTTCGGA
193 ACCGTCTTGAATACTTTAAGGAACCAAAGTTATTAAAGAACTCGTAAAAGTTTGACAAGTTCGGA
* * *
1172 AGTTCATCCAAGAACCAATAGACAAACAATTCTCACGTAAATAAGTTTTTAATTGAAAGACCAAA
258 AGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * * * *
1237 AGTTGTTTACAAATATCATAAACTA-TTTAGACCATATGATGCGATTCGCCGAGCATGGAATGTT
323 AGTTGTTTACAAA-ATGACAAACTATTTTGGACCA-A--AT--TA-T-G-CGA--AT-G--T-TC
* * * *
1301 TGGAAAATTGCTTGATGGAATGAATCATCTTGAATACTTTAAGGAAC
373 T-GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
* * * * *
1348 CGAAGTTATTA-AAGAACTCGTACAAGTTTG-GAAGTTT----G-T---CCAAAAACCAAGAGAG
1 CGATGTTA-TAGAAGAACTCGTAAAAGTTTGACAAGTTTGAAAGTTCGGCCAAGAACCAAGGGAG
* * * * *
1403 AATCAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTATTTAAAAAATGACAAACT
65 AAACAATTCTCACGTAAATAACTTTTTAAATCAAAGACCAAAAGTTATTTACAAAATGACAAACT
* * * *
1468 ATTTGGACGAAAA-GATGTGATTTCCTG-GACATTGAATGTTCGAAAAATTACTGGAAGGAATGG
130 ATTTGGAC-AAAATGATGCGATTTCCCGAG-CATAGAATGTTCGAAAAATTACTCGAAGGAATGG
* * * * * *
1531 ATCTTCTTGTATACTTTAAGGAACCGAAGTTA-TAAAAAATCTCATAAAAGTTTGACAAGTTCGG
193 ACCGTCTTGAATACTTTAAGGAACCAAAGTTATTAAAGAA-CTCGTAAAAGTTTGACAAGTTCGG
* *
1595 AAGTTCATCCAAGAACCAACAGAGAAACAATTCTCAAC-TGAATAAGTTTTTAATTCAAAGACCA
257 AAGTTCATCCAAGAACCAAGAGAGAAACAATTCTC-ACGTAAATAAGTTTTTAATTCAAAGACCA
1659 AAAGTTGTTTACAAAATGACAAACTATTTTGGACCAAATTATGCGAATGTTCTGAAAATTGCTCG
321 AAAGTTGTTTACAAAATGACAAACTATTTTGGACCAAATTATGCGAATGTTCTGAAAATTGCTCG
* * * *
1724 AAGGAATGGATCTTCTTTAATGCTTTAAGGGAC
386 AAGGAATGGATCGTCTTGAATACTTTAAGGAAC
* * * * *
1757 CGATGCTATAGAAGAACTCGTAAAAGTTTAACAAGTTCGAAAGTTCGACCAAGAACCAAGGGGGA
1 CGATGTTATAGAAGAACTCGTAAAAGTTTGACAAGTTTGAAAGTTCGGCCAAGAACCAAGGGAGA
* *
1822 AACAATTCTCGCGTAAATAACTTTTTAAATCAAAGACCAAAAGTTATTTACAAAATGA-ATAATT
66 AACAATTCTCACGTAAATAACTTTTTAAATCAAAGACCAAAAGTTATTTACAAAATGACA-AACT
* ** * * **
1886 GTTTGGACAAAATGATGCTCTTTCCCGAGCATGGAATGTTTGGGAAATTACTCGAAGGAATGGAC
130 ATTTGGACAAAATGATGCGATTTCCCGAGCATAGAATGTTCGAAAAATTACTCGAAGGAATGGAC
* *
1951 CGTCTTGAATACTTTAAGGAACCAAAGTTATTCAAGAGCTCGTAAAAGTTTGACAAG-T------
195 CGTCTTGAATACTTTAAGGAACCAAAGTTATTAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAG
* * * *
2009 TTCGTCCAAGAACCAAGAGAGAAACAATTCT-GCGTAAATAGGTTTTTAATTCAACGACCAAAAG
260 TTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
2073 TTGTTTACAAAATGACAAACTATTTTGGACCAAATTATGCGAATGTTCTGAAAATTGCTCGAAGG
325 TTGTTTACAAAATGACAAACTATTTTGGACCAAATTATGCGAATGTTCTGAAAATTGCTCGAAGG
* * *
2138 AATGGATCGTCTTTAATGCTTTAAGGGAC
390 AATGGATCGTCTTGAATACTTTAAGGAAC
* * * * *
2167 CGATGCTATAGAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCGGCCATGACCCAAGGGAGA
1 CGATGTTATAGAAGAACTCGTAAAAGTTTGACAAGTTTGAAAGTTCGGCCAAGAACCAAGGGAGA
* * *
2232 AACAATTCTCGCATAAATAACTTTTTAAATCAAAGACCAAAAGTTGTTTACAAAATGA-ATAACT
66 AACAATTCTCACGTAAATAACTTTTTAAATCAAAGACCAAAAGTTATTTACAAAATGACA-AACT
*
2296 GTTTGGACAAA
130 ATTTGGACAAA
Statistics
Matches: 1203, Mismatches: 148, Indels: 90
0.83 0.10 0.06
Matches are distributed among these distances:
408 2 0.00
409 62 0.05
410 258 0.21
411 30 0.02
413 1 0.00
414 3 0.00
415 4 0.00
416 93 0.08
417 10 0.01
418 356 0.30
419 27 0.02
421 2 0.00
422 3 0.00
423 96 0.08
424 123 0.10
425 52 0.04
426 1 0.00
427 2 0.00
428 1 0.00
429 3 0.00
430 1 0.00
432 1 0.00
433 8 0.01
434 62 0.05
435 2 0.00
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (418 bp):
CGATGTTATAGAAGAACTCGTAAAAGTTTGACAAGTTTGAAAGTTCGGCCAAGAACCAAGGGAGA
AACAATTCTCACGTAAATAACTTTTTAAATCAAAGACCAAAAGTTATTTACAAAATGACAAACTA
TTTGGACAAAATGATGCGATTTCCCGAGCATAGAATGTTCGAAAAATTACTCGAAGGAATGGACC
GTCTTGAATACTTTAAGGAACCAAAGTTATTAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGT
TCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
TGTTTACAAAATGACAAACTATTTTGGACCAAATTATGCGAATGTTCTGAAAATTGCTCGAAGGA
ATGGATCGTCTTGAATACTTTAAGGAAC
Found at i:1657 original size:216 final size:211
Alignment explanation
Indices: 861--2306 Score: 1319
Period size: 216 Copynumber: 6.9 Consensus size: 211
851 ATATTATGCT
* * * *
861 AATGTTCTAAAAATTGCACGAAGGAATGGATCGTCTTGAATACTTTAAGAAACCGATGTTATAAA
1 AATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT-AA
* * * * * * * * *
926 AGAAATCGTAAAAGTTTGACAAGTTTGGAAGCTCGGCCGAGAACCAATAGACAAATAAATCTCAC
65 AGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
* * *
991 ATAAATAAGTTTTTAAATCGAAGACCAAAAGTTTTTTTTACAAAATGACAAACTATTTGGACGAA
130 ATAAATAAGTTTTTAATTCAAAGACCAAAAG--TTGTTTACAAAATGACAAACTATTTGGAC-AA
* *
1056 AAGGTGCGATTTCCCGAGCATAG
192 AAGATG-TA-TTCCCGAGCAT-G
* * *
1079 AATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCATG-ATACTTTAAGGTATCGAAGTTATGAA
1 AATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT-AA
* * * *
1143 AGAACTTGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAATAGACAAACAATTCTCAC
65 AGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
* * * * * *
1208 GTAAATAAGTTTTTAATTGAAAGACCAAAAGTTGTTTACAAATATCATAAACTATTTAGACCATA
130 ATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA-ATGACAAACTATTTGGA-CAAA
* *
1273 TGATGCGATTCGCCGAGCATGG
193 AGATG-TATTC-CCGAGCAT-G
* * * * * *
1295 AATGTTTGGAAAATTGCTTGATGGAATGAATCATCTTGAATACTTTAAGGAACCGAAGTTATTAA
1 AATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTA-TAA
* * * * *
1360 AGAACTC------G--T-ACAAGTTTGGAAGTTTGTCCAAAAACCAAGAGAGAATCAATTCTCAT
65 AGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
* * *
1416 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTATTTAAAAAATGACAAACTATTTGGACGAAAA
130 ATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGAC-AAAA
*
1481 GATGTGATTTCCTG-GACATTG
194 GATGT-A-TTCCCGAG-CA-TG
* * * *
1502 AATGTTCGAAAAATTACTGGAAGGAATGGATCTTCTTGTATACTTTAAGGAACCGAAGTTATAAA
1 AATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAA
* * * *
1567 AAATCTCATAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAACAGAGAAACAATTCTCA-
66 GAA-CTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
* *
1631 ACTGAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTTGGAC-CA
130 A-TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA-TTTGGACAAA
1695 A-AT-TA-T-----GC--G
193 AGATGTATTCCCGAGCATG
* * * * * *
1704 AATGTTCTG-AAAATTGCTCGAAGGAATGGATCTTCTTTAATGCTTTAAGGGACCGATGCTATAG
1 AATGTTC-GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATA-
* * * * * *
1768 AAGAACTCGTAAAAGTTTAACAAGTTCGAAAGTTCGACCAAGAACCAAGGGGGAAACAATTCTCG
64 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * * * *
1833 CGTAAATAACTTTTTAAATCAAAGACCAAAAGTTATTTACAAAATGA-ATAATTGTTTGGACAAA
129 CATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACA-AACTATTTGGACAAA
*
1897 ATGATGCTCTTTCCCGAGCATGG
193 A-GATG-T-ATTCCCGAGCAT-G
* ** * * * *
1920 AATGTTTGGGAAATTACTCGAAGGAATGGACCGTCTTGAATACTTTAAGGAACCAAAGTTATTCA
1 AATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTA-TAA
* *
1985 AGAGCTCGTAAAAGTTTGACAAG-T------TTCGTCCAAGAACCAAGAGAGAAACAATTCT-GC
65 AGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
* * * *
2042 GTAAATAGGTTTTTAATTCAACGACCAAAAGTTGTTTACAAAATGACAAACTATTTTGGAC-CAA
130 ATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA-TTTGGACAAAA
2106 -AT-TA-T-----GC--G
194 GATGTATTCCCGAGCATG
* * * * *
2114 AATGTTCTG-AAAATTGCTCGAAGGAATGGATCGTCTTTAATGCTTTAAGGGACCGATGCTATAG
1 AATGTTC-GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATA-
* * * * * * *
2178 AAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCGGCCATGACCCAAGGGAGAAACAATTCTCG
64 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * *
2243 CATAAATAACTTTTTAAATCAAAGACCAAAAGTTGTTTACAAAATGA-ATAACTGTTTGGACAAA
129 CATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACA-AACTATTTGGACAAA
Statistics
Matches: 1017, Mismatches: 154, Indels: 130
0.78 0.12 0.10
Matches are distributed among these distances:
193 1 0.00
194 72 0.07
195 2 0.00
197 2 0.00
201 43 0.04
202 200 0.20
203 5 0.00
204 3 0.00
205 1 0.00
206 12 0.01
207 82 0.08
208 131 0.13
209 37 0.04
210 1 0.00
211 1 0.00
212 1 0.00
213 4 0.00
214 2 0.00
215 18 0.02
216 222 0.22
217 141 0.14
218 36 0.04
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (211 bp):
AATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAA
GAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACA
TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACAAAAGA
TGTATTCCCGAGCATG
Found at i:1752 original size:202 final size:202
Alignment explanation
Indices: 1501--2289 Score: 818
Period size: 202 Copynumber: 3.9 Consensus size: 202
1491 CCTGGACATT
* * *
1501 GAATGTTC-GAAAAATTACTGGAAGGAATGGATCTTCTTGT-ATACTTTAAGGAACCGAAGTTAT
1 GAATGTTCTG-AAAATTACTCGAAGGAATGGATCGTCTT-TAATACTTTAAGGAACCGAAGCTAT
* *
1564 A-AAAAATCTCATAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAACAGAGAAACAATTC
64 AGAAAAA-CTCATAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTC
* * * *
1628 TC-AACTGAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTTGGA
128 TCGCA-TAAATAACTTTTTAAATCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTTGGA
1692 CCAAATTATGC
192 CCAAATTATGC
* * * * *
1703 GAATGTTCTGAAAATTGCTCGAAGGAATGGATCTTCTTTAATGCTTTAAGGGACCGATGCTATAG
1 GAATGTTCTGAAAATTACTCGAAGGAATGGATCGTCTTTAATACTTTAAGGAACCGAAGCTATAG
* * * * *
1768 AAGAACTCGTAAAAGTTTAACAAGTTCGAAAGTTCGA-CCAAGAACCAAGGGGGAAACAATTCTC
66 AAAAACTCATAAAAGTTTGACAAGTTCGAAAGTTC-ATCCAAGAACCAAGAGAGAAACAATTCTC
* *
1832 GCGTAAATAACTTTTTAAATCAAAGACCAAAAGTTATTTACAAAATGA-ATAA-T-TGTTTGGAC
130 GCATAAATAACTTTTTAAATCAAAGACCAAAAGTTGTTTACAAAATGACA-AACTAT-TTTGGAC
* *
1894 AAAATGATGCTCTTTCCC
193 CAAATTATG--------C
* * * * *
1912 GAGCATGGAATGTTTGGGAAATTACTCGAAGGAATGGACCGTCTTGAATACTTTAAGGAACCAAA
1 GA--AT-G--T-TCT-GAAAATTACTCGAAGGAATGGATCGTCTTTAATACTTTAAGGAACCGAA
* ** * * * *
1977 GTTATTCAAGAGCTCGTAAAAGTTTGACAAG-T------TTCGTCCAAGAACCAAGAGAGAAACA
59 GCTATAGAAAAACTCATAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACA
* ** * *
2035 ATTCT-GCGTAAATAGGTTTTTAATTCAACGACCAAAAGTTGTTTACAAAATGACAAACTATTTT
124 ATTCTCGCATAAATAACTTTTTAAATCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTT
2099 GGACCAAATTATGC
189 GGACCAAATTATGC
* * * *
2113 GAATGTTCTGAAAATTGCTCGAAGGAATGGATCGTCTTTAATGCTTTAAGGGACCGATGCTATAG
1 GAATGTTCTGAAAATTACTCGAAGGAATGGATCGTCTTTAATACTTTAAGGAACCGAAGCTATAG
* ** * * *
2178 AAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCGGCCATGACCCAAGGGAGAAACAATTCTCG
66 AAAAACTCATAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCG
2243 CATAAATAACTTTTTAAATCAAAGACCAAAAGTTGTTTACAAAATGA
131 CATAAATAACTTTTTAAATCAAAGACCAAAAGTTGTTTACAAAATGA
2290 ATAACTGTTT
Statistics
Matches: 484, Mismatches: 69, Indels: 68
0.78 0.11 0.11
Matches are distributed among these distances:
194 67 0.14
195 3 0.01
196 1 0.00
198 1 0.00
199 2 0.00
200 1 0.00
201 47 0.10
202 191 0.39
203 6 0.01
208 45 0.09
209 46 0.10
210 1 0.00
211 2 0.00
212 1 0.00
214 1 0.00
215 3 0.01
216 66 0.14
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (202 bp):
GAATGTTCTGAAAATTACTCGAAGGAATGGATCGTCTTTAATACTTTAAGGAACCGAAGCTATAG
AAAAACTCATAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCG
CATAAATAACTTTTTAAATCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTTGGACCAA
ATTATGC
Done.