Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005281.1 Kokia drynarioides strain JFW-HI SEQ_119203, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2071
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.39


Found at i:149 original size:26 final size:26

Alignment explanation


    Indices: 118--167  Score: 66
    Period size: 26  Copynumber: 1.9  Consensus size: 26

        108 CCTATTCACT

                               *       
        118 TTGACC-AGACTTGTTGACTTTGACCG
          1 TTGACCTAGA-TTGTTGACATTGACCG

                   *                
        144 TTGACCTTGATTGTTGACATTGAC
          1 TTGACCTAGATTGTTGACATTGAC

        168 TTTGATCGTT


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  26   19  0.90
  27    2  0.10

ACGTcount: A:0.20, C:0.20, G:0.22, T:0.38


Consensus pattern (26 bp):   
TTGACCTAGATTGTTGACATTGACCG

Found at i:166 original size:19 final size:19

Alignment explanation


    Indices: 144--180  Score: 56
    Period size: 19  Copynumber: 1.9  Consensus size: 19

        134 ACTTTGACCG

                       *       
        144 TTGACCTTGATTGTTGACA
          1 TTGACCTTGATCGTTGACA

                 *            
        163 TTGACTTTGATCGTTGAC
          1 TTGACCTTGATCGTTGAC

        181 TTTTTTGGCC


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  19   16  1.00

ACGTcount: A:0.19, C:0.16, G:0.22, T:0.43


Consensus pattern (19 bp):   
TTGACCTTGATCGTTGACA
Done.