Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01005296.1 Kokia drynarioides strain JFW-HI SEQ_119222, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11542
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Found at i:4758 original size:307 final size:307
Alignment explanation
Indices: 4204--4817 Score: 1174
Period size: 307 Copynumber: 2.0 Consensus size: 307
4194 CATGAGAGAG
*
4204 CCATCGCCTGGAGTATTGTGAATATCAGAGGCATTAGTCCCTCTTTATGCATGCATAAAATTAGG
1 CCATCGCCTGAAGTATTGTGAATATCAGAGGCATTAGTCCCTCTTTATGCATGCATAAAATTAGG
4269 CTGGAAGATGAAGGAAAATAGTTAATTGAATAGCAACATCGATTGAACAAGAAAATGAAAGAAGT
66 CTGGAAGATGAAGGAAAATAGTTAATTGAATAGCAACATCGATTGAACAAGAAAATGAAAGAAGT
4334 TGTGAAGAAAAAAATCATTAAATGGCTAGATGCAGGCATAATCTATCCAATCTCGGACAGTACAT
131 TGTGAAGAAAAAAATCATTAAATGGCTAGATGCAGGCATAATCTATCCAATCTCGGACAGTACAT
4399 GTGTGAGACCGGTCCAATGTGTGCCAAAGAAGAGCACATCAAGGTGGTAAGCAATGATAAAAATG
196 GTGTGAGACCGGTCCAATGTGTGCCAAAGAAGAGCACATCAAGGTGGTAAGCAATGATAAAAATG
*
4464 AACTAATCCCTACTCGCATTGCAACAGGTTGGTGAGTGTGCATGGAT
261 AACTAATCCCTACTCGCATTGCAACAGGTTGGCGAGTGTGCATGGAT
4511 CCATCGCCTGAAGTATTGTGAATATCAGAGGCATTAGTCCCTCTTTATGCATGCATAAAATTAGG
1 CCATCGCCTGAAGTATTGTGAATATCAGAGGCATTAGTCCCTCTTTATGCATGCATAAAATTAGG
4576 CTGGAAGATGAAGGAAAATAGTTAATTGAATAGCAACATCGATTGAACAAGAAAATGAAAGAAGT
66 CTGGAAGATGAAGGAAAATAGTTAATTGAATAGCAACATCGATTGAACAAGAAAATGAAAGAAGT
* *
4641 TGTGAAGAAAGAAATCATTAAATGGCTAGATGCAGGCATAATCTATCCAATCTCGGACATTACAT
131 TGTGAAGAAAAAAATCATTAAATGGCTAGATGCAGGCATAATCTATCCAATCTCGGACAGTACAT
* *
4706 GTGTGAGCCCGGTCCAATGTGTGCCAAAGAAGAGCACATCACGGTGGTAAGCAATGATAAAAATG
196 GTGTGAGACCGGTCCAATGTGTGCCAAAGAAGAGCACATCAAGGTGGTAAGCAATGATAAAAATG
4771 AACTAATCCCTACTCGCATTGCAACAGGTTGGCGAGTGTGCATGGAT
261 AACTAATCCCTACTCGCATTGCAACAGGTTGGCGAGTGTGCATGGAT
4818 TATCATCATT
Statistics
Matches: 301, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
307 301 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.24
Consensus pattern (307 bp):
CCATCGCCTGAAGTATTGTGAATATCAGAGGCATTAGTCCCTCTTTATGCATGCATAAAATTAGG
CTGGAAGATGAAGGAAAATAGTTAATTGAATAGCAACATCGATTGAACAAGAAAATGAAAGAAGT
TGTGAAGAAAAAAATCATTAAATGGCTAGATGCAGGCATAATCTATCCAATCTCGGACAGTACAT
GTGTGAGACCGGTCCAATGTGTGCCAAAGAAGAGCACATCAAGGTGGTAAGCAATGATAAAAATG
AACTAATCCCTACTCGCATTGCAACAGGTTGGCGAGTGTGCATGGAT
Done.