Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005298.1 Kokia drynarioides strain JFW-HI SEQ_119225, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 907

Length: 1512
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.32


Found at i:142 original size:84 final size:84

Alignment explanation


    Indices: 2--230  Score: 345
    Period size: 84  Copynumber: 2.7  Consensus size: 84

          1 G

                       *                 *                               *   
          2 TCAAATCAACATATTATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTCAAA
          1 TCAAATCAACACATTATTTGATAAAAATTATAATATAATAATAATTTTTTATTTAAATATTAAAA

                          *     
         67 TTT-AGTAAATAATGTATTA
         66 TTTGA-TAAATAATATATTA

                                                             *               
         86 TCAAATCAACACATTATTTGATAAAAATTATAATATAATAATAATTTTTAATTTAAATATTAAAA
          1 TCAAATCAACACATTATTTGATAAAAATTATAATATAATAATAATTTTTTATTTAAATATTAAAA

                              *
        151 TTTGATAAATAATATATTG
         66 TTTGATAAATAATATATTA

                                   *                                      
        170 TCAAATCAACACATTATTTGATATAAATTGA-AATATAATAATAATATTTTTTATTTAAATA
          1 TCAAATCAACACATTATTTGATAAAAATT-ATAATATAATAAT-A-ATTTTTTATTTAAATA

        231 ATGTTAAATT


Statistics
Matches: 133,  Mismatches: 8, Indels: 6
        0.90            0.05        0.04

Matches are distributed among these distances:
  84  115  0.86
  85    3  0.02
  86   15  0.11

ACGTcount: A:0.48, C:0.05, G:0.04, T:0.43


Consensus pattern (84 bp):   
TCAAATCAACACATTATTTGATAAAAATTATAATATAATAATAATTTTTTATTTAAATATTAAAA
TTTGATAAATAATATATTA
Done.