Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000530.1 Kokia drynarioides strain JFW-HI SEQ_111421, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2613
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.32


Found at i:1824 original size:56 final size:56

Alignment explanation


    Indices: 1615--1836  Score: 248
    Period size: 56  Copynumber: 4.0  Consensus size: 56

       1605 TTGAACCAAA

                 *                          *             *         
       1615 ATAGCTTTACGCTCTAACCGAGACATAAGCAACCCAAAGCTCTACCAGAGCTATAC
          1 ATAGCATTACGCTCTAACCGAGACATAAGCAATCCAAAGCTCTACCCGAGCTATAC

                         *          *      *       *     **         
       1671 ATAGCATTACGCTGTAACCGAGACGTAAGCATTCCAAAGATCTACTTGAGCTATAC
          1 ATAGCATTACGCTCTAACCGAGACATAAGCAATCCAAAGCTCTACCCGAGCTATAC

                     *    *               **                        
       1727 ATAGCATTATGCTCCAACCGAGACATAAGCCTTCCAAAGCTCTACCCGAGCTATAC
          1 ATAGCATTACGCTCTAACCGAGACATAAGCAATCCAAAGCTCTACCCGAGCTATAC

            * *        *           **            *       *         
       1783 TTGGCATTACGTTCTAACCGAGATGTAAGCAGAT-CAGAGCTCTAACCGAGCTAT
          1 ATAGCATTACGCTCTAACCGAGACATAAGCA-ATCCAAAGCTCTACCCGAGCTAT

       1837 CCTTCGACAA


Statistics
Matches: 138,  Mismatches: 27, Indels: 2
        0.83            0.16        0.01

Matches are distributed among these distances:
  56  137  0.99
  57    1  0.01

ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23


Consensus pattern (56 bp):   
ATAGCATTACGCTCTAACCGAGACATAAGCAATCCAAAGCTCTACCCGAGCTATAC
Done.