Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005303.1 Kokia drynarioides strain JFW-HI SEQ_119232, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2533
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37


Found at i:173 original size:30 final size:30

Alignment explanation


    Indices: 133--210  Score: 129
    Period size: 30  Copynumber: 2.6  Consensus size: 30

        123 TTCGTGAACA

                 *                 *      
        133 TTAAACAAACGAACATGAACACATATAATT
          1 TTAAATAAACGAACATGAACACACATAATT

                               *          
        163 TTAAATAAACGAACATGAATACACATAATT
          1 TTAAATAAACGAACATGAACACACATAATT

                              
        193 TTAAATAAACGAACATGA
          1 TTAAATAAACGAACATGA

        211 TAAAAAATTT


Statistics
Matches: 45,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  30   45  1.00

ACGTcount: A:0.54, C:0.14, G:0.08, T:0.24


Consensus pattern (30 bp):   
TTAAATAAACGAACATGAACACACATAATT
Done.