Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005320.1 Kokia drynarioides strain JFW-HI SEQ_119256, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 628

Length: 1047
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39


Found at i:267 original size:26 final size:27

Alignment explanation


    Indices: 238--291  Score: 74
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        228 TTTGATAAAT

                     *        **       
        238 AAAAAC-CATCTTTTAAATTTTAACCA
          1 AAAAACACAGCTTTTAAACATTAACCA

                                       
        264 AAAAACACAGCTTTTAAACATTAACCA
          1 AAAAACACAGCTTTTAAACATTAACCA

             
        291 A
          1 A

        292 TCAATTAGAC


Statistics
Matches: 24,  Mismatches: 3, Indels: 1
        0.86            0.11        0.04

Matches are distributed among these distances:
  26    6  0.25
  27   18  0.75

ACGTcount: A:0.50, C:0.20, G:0.02, T:0.28


Consensus pattern (27 bp):   
AAAAACACAGCTTTTAAACATTAACCA

Done.