Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005331.1 Kokia drynarioides strain JFW-HI SEQ_119283, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2377
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30


Found at i:2086 original size:10 final size:10

Alignment explanation


    Indices: 2067--2097  Score: 53
    Period size: 10  Copynumber: 3.1  Consensus size: 10

       2057 AACAATAAGA

                 *    
       2067 AGAGAATTCG
          1 AGAGATTTCG

                      
       2077 AGAGATTTCG
          1 AGAGATTTCG

                      
       2087 AGAGATTTCG
          1 AGAGATTTCG

             
       2097 A
          1 A

       2098 ATGCATGGAA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  10   20  1.00

ACGTcount: A:0.35, C:0.10, G:0.29, T:0.26


Consensus pattern (10 bp):   
AGAGATTTCG
Done.