Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005332.1 Kokia drynarioides strain JFW-HI SEQ_119284, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4534
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37


Found at i:123 original size:23 final size:23

Alignment explanation


    Indices: 93--241  Score: 130
    Period size: 23  Copynumber: 6.5  Consensus size: 23

         83 ACGCTAGCAC

                           *       
         93 GCTTACTGTTTCGCATTTCGTGT
          1 GCTTACTGTTTCGCACTTCGTGT

                                   
        116 GCTTACTGTTTCGCACTTCGTGT
          1 GCTTACTGTTTCGCACTTCGTGT

                            *      
        139 GCTTACTGTTTCGCACCTCGTGT
          1 GCTTACTGTTTCGCACTTCGTGT

              *                     *
        162 GCCTACTGATTT-GCACTAT-GTGC
          1 GCTTACTG-TTTCGCACT-TCGTGT

              *     *               
        185 GCCTACTGATT-GCACTGT-GTGT
          1 GCTTACTGTTTCGCACT-TCGTGT

              *  *   *               
        207 GCCTATTAGATT-GCACTGT-GTGT
          1 GCTTACT-GTTTCGCACT-TCGTGT

                        
        230 GCTTACTGTTTC
          1 GCTTACTGTTTC

        242 CCCAGCACTT


Statistics
Matches: 110,  Mismatches: 12, Indels: 8
        0.85            0.09        0.06

Matches are distributed among these distances:
  22   20  0.18
  23   86  0.78
  24    4  0.04

ACGTcount: A:0.12, C:0.24, G:0.23, T:0.41


Consensus pattern (23 bp):   
GCTTACTGTTTCGCACTTCGTGT

Done.