Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005334.1 Kokia drynarioides strain JFW-HI SEQ_119287, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12969
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33


Found at i:12765 original size:22 final size:21

Alignment explanation


    Indices: 12740--12780  Score: 55
    Period size: 21  Copynumber: 1.9  Consensus size: 21

      12730 TTATAAGGTT

                    *             
      12740 TTAAAACTTTTCTAAAGTTTCG
          1 TTAAAA-TATTCTAAAGTTTCG

                *              
      12762 TTAATATATTCTAAAGTTT
          1 TTAAAATATTCTAAAGTTT

      12781 AATGAATTTT


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  21   12  0.71
  22    5  0.29

ACGTcount: A:0.34, C:0.10, G:0.07, T:0.49


Consensus pattern (21 bp):   
TTAAAATATTCTAAAGTTTCG
Done.