Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005336.1 Kokia drynarioides strain JFW-HI SEQ_119289, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8751
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32


Found at i:5667 original size:22 final size:21

Alignment explanation


    Indices: 5637--5677  Score: 55
    Period size: 22  Copynumber: 1.9  Consensus size: 21

       5627 AAGGAAAGAG

                     *    *      
       5637 AAAAGAAAAGAAAACAAACGT
          1 AAAAGAAAAAAAAAAAAACGT

                                
       5658 AAAAGGAAAAAAAAAAAAAC
          1 AAAA-GAAAAAAAAAAAAAC

       5678 AAACAAACGT


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  21    4  0.24
  22   13  0.76

ACGTcount: A:0.78, C:0.07, G:0.12, T:0.02


Consensus pattern (21 bp):   
AAAAGAAAAAAAAAAAAACGT

Found at i:6796 original size:15 final size:16

Alignment explanation


    Indices: 6761--6799  Score: 62
    Period size: 15  Copynumber: 2.5  Consensus size: 16

       6751 ATAATAAAAA

                            
       6761 TATAATTTATCATTTT
          1 TATAATTTATCATTTT

            *               
       6777 AATAATTTAT-ATTTT
          1 TATAATTTATCATTTT

                    
       6792 TATAATTT
          1 TATAATTT

       6800 TTAAAAAATT


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  15   12  0.57
  16    9  0.43

ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62


Consensus pattern (16 bp):   
TATAATTTATCATTTT
Done.