Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005343.1 Kokia drynarioides strain JFW-HI SEQ_119302, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 939

Length: 1566
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37


Found at i:265 original size:23 final size:23

Alignment explanation


    Indices: 247--291  Score: 63
    Period size: 23  Copynumber: 1.9  Consensus size: 23

        237 GAGAAAAGAG

                   *               
        247 TCGAAAAGAAAAAGTGAAAAAAA
          1 TCGAAAAAAAAAAGTGAAAAAAA

             *                    
        270 TTGAAAAAAAAAAGATGAAAAA
          1 TCGAAAAAAAAAAG-TGAAAAA

        292 GAAAAAAATG


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  23   12  0.63
  24    7  0.37

ACGTcount: A:0.71, C:0.02, G:0.16, T:0.11


Consensus pattern (23 bp):   
TCGAAAAAAAAAAGTGAAAAAAA
Done.