Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005344.1 Kokia drynarioides strain JFW-HI SEQ_119303, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2384
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36


Found at i:1748 original size:34 final size:33

Alignment explanation


    Indices: 1686--1754  Score: 95
    Period size: 34  Copynumber: 2.1  Consensus size: 33

       1676 AACCTTTCAT

                     *             *         
       1686 CTCCCTTACTTTTAACTTTCCATCTTTCTTAAC
          1 CTCCCTTACCTTTAACTTTCCATATTTCTTAAC

                                               
       1719 CTCCCTTGACCTTTAACCTTT-CATATTTCTTAAC
          1 CTCCCTT-ACCTTTAA-CTTTCCATATTTCTTAAC

              
       1753 CT
          1 CT

       1755 TTCATATTAT


Statistics
Matches: 32,  Mismatches: 2, Indels: 3
        0.86            0.05        0.08

Matches are distributed among these distances:
  33    7  0.22
  34   21  0.66
  35    4  0.12

ACGTcount: A:0.19, C:0.33, G:0.01, T:0.46


Consensus pattern (33 bp):   
CTCCCTTACCTTTAACTTTCCATATTTCTTAAC
Done.