Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005348.1 Kokia drynarioides strain JFW-HI SEQ_119311, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3359
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.31


Found at i:3033 original size:35 final size:34

Alignment explanation


    Indices: 2971--3036  Score: 91
    Period size: 33  Copynumber: 1.9  Consensus size: 34

       2961 ATATATTCAA

                                              
       2971 AAAAATATTCATATAATATAAATAATTAAAATGC
          1 AAAAATATTCATATAATATAAATAATTAAAATGC

                                              
       3005 AAAAA-ATT-ATATAAGTATAAATTAAATTAAAA
          1 AAAAATATTCATATAA-TATAAA-T-AATTAAAA

       3037 ACAATTATGA


Statistics
Matches: 29,  Mismatches: 0, Indels: 5
        0.85            0.00        0.15

Matches are distributed among these distances:
  32    6  0.21
  33    9  0.31
  34    6  0.21
  35    8  0.28

ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32


Consensus pattern (34 bp):   
AAAAATATTCATATAATATAAATAATTAAAATGC
Done.