Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005352.1 Kokia drynarioides strain JFW-HI SEQ_119326, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 975

Length: 1625
ACGTcount: A:0.40, C:0.20, G:0.14, T:0.26


Found at i:1470 original size:19 final size:19

Alignment explanation


    Indices: 1446--1482  Score: 56
    Period size: 19  Copynumber: 1.9  Consensus size: 19

       1436 GGCCAAAAAA

                  *            
       1446 GTCAACGATCAAAGTCAAT
          1 GTCAACAATCAAAGTCAAT

                        *     
       1465 GTCAACAATCAAGGTCAA
          1 GTCAACAATCAAAGTCAA

       1483 CGGTCAAAGT


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  19   16  1.00

ACGTcount: A:0.43, C:0.22, G:0.16, T:0.19


Consensus pattern (19 bp):   
GTCAACAATCAAAGTCAAT
Done.