Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005353.1 Kokia drynarioides strain JFW-HI SEQ_119331, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5984
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.35


Found at i:989 original size:25 final size:20

Alignment explanation


    Indices: 942--983  Score: 84
    Period size: 20  Copynumber: 2.1  Consensus size: 20

        932 TTAGACTTTT

                                
        942 AACACAACACTTTATAATTC
          1 AACACAACACTTTATAATTC

                                
        962 AACACAACACTTTATAATTC
          1 AACACAACACTTTATAATTC

              
        982 AA
          1 AA

        984 TCCAACCCAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   22  1.00

ACGTcount: A:0.48, C:0.24, G:0.00, T:0.29


Consensus pattern (20 bp):   
AACACAACACTTTATAATTC
Done.