Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005358.1 Kokia drynarioides strain JFW-HI SEQ_119337, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5894
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33


Found at i:3851 original size:30 final size:30

Alignment explanation


    Indices: 3817--3876  Score: 77
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       3807 AAAGGTGGAG

                                  *        
       3817 GGTTAAAATTG-TTGAATTATTTAAAATTAA
          1 GGTT-AAATTGATTGAATTATTCAAAATTAA

                  *                *      
       3847 GGTTAATTTGATTGAATTATTCAGAATTAA
          1 GGTTAAATTGATTGAATTATTCAAAATTAA

       3877 AAAAAAGGTC


Statistics
Matches: 26,  Mismatches: 3, Indels: 2
        0.84            0.10        0.06

Matches are distributed among these distances:
  29    5  0.19
  30   21  0.81

ACGTcount: A:0.40, C:0.02, G:0.15, T:0.43


Consensus pattern (30 bp):   
GGTTAAATTGATTGAATTATTCAAAATTAA
Done.