Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005359.1 Kokia drynarioides strain JFW-HI SEQ_119338, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4796
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24


Found at i:4193 original size:5 final size:5

Alignment explanation


    Indices: 4183--4247  Score: 103
    Period size: 5  Copynumber: 12.8  Consensus size: 5

       4173 TGGCATAGCC

                                                                       
       4183 TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA
          1 TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA

            *     *          
       4233 GTAAA GTAAA GTTAA
          1 TTAAA TTAAA -TTAA

       4248 GGGCGAGGTT


Statistics
Matches: 57,  Mismatches: 2, Indels: 1
        0.95            0.03        0.02

Matches are distributed among these distances:
   5   54  0.95
   6    3  0.05

ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37


Consensus pattern (5 bp):   
TTAAA

Done.